miRNA display CGI


Results 161 - 180 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 117295 0.66 0.476174
Target:  5'- cGCGCGCgagcugcucggcgCUCGCCac-GCCGaGGGCGg -3'
miRNA:   3'- -CGCGCG-------------GAGCGGggcCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 39773 0.66 0.477059
Target:  5'- gGCGcCGCCUUcggGCaCCgcgCGGCCAaccgcUGGGgGCu -3'
miRNA:   3'- -CGC-GCGGAG---CG-GG---GCCGGU-----ACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 54448 0.66 0.477059
Target:  5'- -gGCGCC-CGCCgUGGCCGa--GCGCc -3'
miRNA:   3'- cgCGCGGaGCGGgGCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58916 0.66 0.477059
Target:  5'- aCGCGCUccccCGCCgCGGCCGUcauaGCGCc -3'
miRNA:   3'- cGCGCGGa---GCGGgGCCGGUAcc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 81791 0.66 0.477059
Target:  5'- gGCGCGCCcgUCGaagagCCCGGCgAagcccgcgGGGCaGCc -3'
miRNA:   3'- -CGCGCGG--AGCg----GGGCCGgUa-------CCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 88387 0.66 0.477059
Target:  5'- aGCGCGuCCgcggCGUCCgCGGCCGcGaGGCcCg -3'
miRNA:   3'- -CGCGC-GGa---GCGGG-GCCGGUaC-CCGcG- -5'
29375 5' -65.6 NC_006151.1 + 100931 0.66 0.477059
Target:  5'- cGCGgGCg-UGCCCCuGCUcgcgcaaacGUGGGUGCc -3'
miRNA:   3'- -CGCgCGgaGCGGGGcCGG---------UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136213 0.66 0.477059
Target:  5'- gGCGCGCUUCgGCCCCGaggagaagacGCU---GGUGCu -3'
miRNA:   3'- -CGCGCGGAG-CGGGGC----------CGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 141861 0.66 0.477059
Target:  5'- uCGCGCCgCGCCCUcuggugccggagGGCC--GGGCa- -3'
miRNA:   3'- cGCGCGGaGCGGGG------------CCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 82251 0.66 0.474406
Target:  5'- cGCGCaggccgaggaagGCCUCGCCCagCgucacguugaagacGGCCGcgGGGCaGCg -3'
miRNA:   3'- -CGCG------------CGGAGCGGG--G--------------CCGGUa-CCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 104188 0.66 0.468246
Target:  5'- cGCGCGCUcggCGCCaacgCCGaGaCCGUGaccacGGCGCu -3'
miRNA:   3'- -CGCGCGGa--GCGG----GGC-C-GGUAC-----CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 67748 0.66 0.468246
Target:  5'- gGCGCGgCg-GCCCC-GUCG-GGGUGCg -3'
miRNA:   3'- -CGCGCgGagCGGGGcCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 82339 0.66 0.468246
Target:  5'- cGCGgGCCacacCGCCgCCGugguguacgugcGCCGgacgccGGGCGCg -3'
miRNA:   3'- -CGCgCGGa---GCGG-GGC------------CGGUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 111315 0.66 0.468246
Target:  5'- gGCG-GCCgcgUGCCCgGGCac-GGGCGa -3'
miRNA:   3'- -CGCgCGGa--GCGGGgCCGguaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 48892 0.66 0.468246
Target:  5'- cGCGCGCCU-GCgCUGGCCGaguaccGcGGcCGCu -3'
miRNA:   3'- -CGCGCGGAgCGgGGCCGGUa-----C-CC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 50363 0.66 0.468246
Target:  5'- cCGCGUCUC-CgCCGGCgG-GGGCGa -3'
miRNA:   3'- cGCGCGGAGcGgGGCCGgUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 52940 0.66 0.468246
Target:  5'- cUGCGCgUCGCCC--GCCAccuUGaGGUGCg -3'
miRNA:   3'- cGCGCGgAGCGGGgcCGGU---AC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58428 0.66 0.468246
Target:  5'- uGCGgcaGCCaCGCCUCGGUggCGUGcGCGCg -3'
miRNA:   3'- -CGCg--CGGaGCGGGGCCG--GUACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 87525 0.66 0.468246
Target:  5'- cCGCGCC-CGCCUCGGCCccccaGcCGCc -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGGuacc-C-GCG- -5'
29375 5' -65.6 NC_006151.1 + 96206 0.66 0.468246
Target:  5'- gGCGcCGCgUCGCCguggcggCGGCCGcggcGaGGCGCa -3'
miRNA:   3'- -CGC-GCGgAGCGGg------GCCGGUa---C-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.