Results 121 - 140 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 33277 | 0.66 | 0.468246 |
Target: 5'- gGCG-GCCaUCGCCCgacccuucCCcgGGGCGCg -3' miRNA: 3'- -CGCgCGG-AGCGGGgcc-----GGuaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 33222 | 0.66 | 0.468246 |
Target: 5'- aCGCGgggCGCCCCGGC---GGGCGg -3' miRNA: 3'- cGCGCggaGCGGGGCCGguaCCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 39773 | 0.66 | 0.477059 |
Target: 5'- gGCGcCGCCUUcggGCaCCgcgCGGCCAaccgcUGGGgGCu -3' miRNA: 3'- -CGC-GCGGAG---CG-GG---GCCGGU-----ACCCgCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 54448 | 0.66 | 0.477059 |
Target: 5'- -gGCGCC-CGCCgUGGCCGa--GCGCc -3' miRNA: 3'- cgCGCGGaGCGGgGCCGGUaccCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 58916 | 0.66 | 0.477059 |
Target: 5'- aCGCGCUccccCGCCgCGGCCGUcauaGCGCc -3' miRNA: 3'- cGCGCGGa---GCGGgGCCGGUAcc--CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 10863 | 0.66 | 0.485954 |
Target: 5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3' miRNA: 3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2165 | 0.66 | 0.485954 |
Target: 5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3' miRNA: 3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 134273 | 0.66 | 0.485954 |
Target: 5'- -gGCGauuguaGCCCCgGGCCGcccacGGGCGCa -3' miRNA: 3'- cgCGCggag--CGGGG-CCGGUa----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 102525 | 0.66 | 0.485954 |
Target: 5'- gGCgGCGUCUaCGaCCagaCGGUgGUGGcGCGCg -3' miRNA: 3'- -CG-CGCGGA-GC-GGg--GCCGgUACC-CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 35215 | 0.66 | 0.485061 |
Target: 5'- cGCGCGCCcauUgGCCCgggcgagccgagaUGGCCGccgcGGGgGCc -3' miRNA: 3'- -CGCGCGG---AgCGGG-------------GCCGGUa---CCCgCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 128606 | 0.66 | 0.484169 |
Target: 5'- cGCGCGCCacccgcggcgugCGCCCCaGGUgGcGGaccacGCGCg -3' miRNA: 3'- -CGCGCGGa-----------GCGGGG-CCGgUaCC-----CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 106207 | 0.66 | 0.480608 |
Target: 5'- gGUGCGgCUCGCCCUccccgaccugaugguGGCCGcgGuGGCcgGCg -3' miRNA: 3'- -CGCGCgGAGCGGGG---------------CCGGUa-C-CCG--CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 78628 | 0.66 | 0.480608 |
Target: 5'- aCGCGCCggaCGCCgacgcgUgcgagcugguggaggCGGCCG-GGGCGCg -3' miRNA: 3'- cGCGCGGa--GCGG------G---------------GCCGGUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 101654 | 0.66 | 0.477059 |
Target: 5'- cCGUGCCcgCGCUCuaCGG-CGUGGGCGa -3' miRNA: 3'- cGCGCGGa-GCGGG--GCCgGUACCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 57244 | 0.66 | 0.477059 |
Target: 5'- cGCGCgGCCUCggcguccgcgcgGCCCucgaCGGCCucgcgcagcaGGGCGUc -3' miRNA: 3'- -CGCG-CGGAG------------CGGG----GCCGGua--------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 141861 | 0.66 | 0.477059 |
Target: 5'- uCGCGCCgCGCCCUcuggugccggagGGCC--GGGCa- -3' miRNA: 3'- cGCGCGGaGCGGGG------------CCGGuaCCCGcg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 136213 | 0.66 | 0.477059 |
Target: 5'- gGCGCGCUUCgGCCCCGaggagaagacGCU---GGUGCu -3' miRNA: 3'- -CGCGCGGAG-CGGGGC----------CGGuacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 100931 | 0.66 | 0.477059 |
Target: 5'- cGCGgGCg-UGCCCCuGCUcgcgcaaacGUGGGUGCc -3' miRNA: 3'- -CGCgCGgaGCGGGGcCGG---------UACCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 88387 | 0.66 | 0.477059 |
Target: 5'- aGCGCGuCCgcggCGUCCgCGGCCGcGaGGCcCg -3' miRNA: 3'- -CGCGC-GGa---GCGGG-GCCGGUaC-CCGcG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 81791 | 0.66 | 0.477059 |
Target: 5'- gGCGCGCCcgUCGaagagCCCGGCgAagcccgcgGGGCaGCc -3' miRNA: 3'- -CGCGCGG--AGCg----GGGCCGgUa-------CCCG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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