miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 142573 0.67 0.408249
Target:  5'- gGCGCGCuCUCcucuccgGUCCCGGCg--GGGCu- -3'
miRNA:   3'- -CGCGCG-GAG-------CGGGGCCGguaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 141861 0.66 0.477059
Target:  5'- uCGCGCCgCGCCCUcuggugccggagGGCC--GGGCa- -3'
miRNA:   3'- cGCGCGGaGCGGGG------------CCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 141759 0.68 0.362205
Target:  5'- cGCGCGCCccgguggCGUCgCCGGuucuguCCcgGGGaCGCg -3'
miRNA:   3'- -CGCGCGGa------GCGG-GGCC------GGuaCCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 140449 0.7 0.280162
Target:  5'- -gGCGCCU-GCCUCGGCgggauCAUGGacGCGCu -3'
miRNA:   3'- cgCGCGGAgCGGGGCCG-----GUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 140233 0.66 0.503975
Target:  5'- cUGCGCCUgaaGCUCgGGCCGUuccuGCGCu -3'
miRNA:   3'- cGCGCGGAg--CGGGgCCGGUAcc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 139917 0.66 0.450874
Target:  5'- cCGCGCCgcgGgCUCGucGCCGUGGGcCGCc -3'
miRNA:   3'- cGCGCGGag-CgGGGC--CGGUACCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 139665 0.68 0.377403
Target:  5'- gGCGCGCC--GCCCgacaGGCCcUGcGGCaGCg -3'
miRNA:   3'- -CGCGCGGagCGGGg---CCGGuAC-CCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 139581 0.71 0.228321
Target:  5'- -aGCGCCUgggcucgCGCCCCcccgagcggcGGCCcguccGGGCGCg -3'
miRNA:   3'- cgCGCGGA-------GCGGGG----------CCGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 139287 0.67 0.393025
Target:  5'- aCGCGCC--GCCCuCGGCgucUGcGGCGCg -3'
miRNA:   3'- cGCGCGGagCGGG-GCCGgu-AC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 139167 0.66 0.494026
Target:  5'- cCGCGCCcucguguggaucuUUGUgCUGGCgGUcgGGGCGCu -3'
miRNA:   3'- cGCGCGG-------------AGCGgGGCCGgUA--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138916 0.66 0.468246
Target:  5'- aGCGUG-CUCGCCgccaCGGUCAUcGGCuGCa -3'
miRNA:   3'- -CGCGCgGAGCGGg---GCCGGUAcCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 138717 0.72 0.203915
Target:  5'- uGCGCGCCgCGCgCgGGUCGUGuacGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGgGgCCGGUACc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 138502 0.72 0.199221
Target:  5'- cGgGCGCCcgcugcaccuccUCGUCCUcggGGUgAUGGGCGCg -3'
miRNA:   3'- -CgCGCGG------------AGCGGGG---CCGgUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138157 0.69 0.312428
Target:  5'- gGCGCGCgCUCgagGCCUucguggcggacgUGGCCAU-GGCGCc -3'
miRNA:   3'- -CGCGCG-GAG---CGGG------------GCCGGUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138116 0.67 0.393025
Target:  5'- gGCGgacaUGCUgcgCGgCCUGGCCGUGGaCGCg -3'
miRNA:   3'- -CGC----GCGGa--GCgGGGCCGGUACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 137748 0.68 0.354766
Target:  5'- -gGCGCCgacacgGUCCgCGGCC-UGGcGCGCg -3'
miRNA:   3'- cgCGCGGag----CGGG-GCCGGuACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 137649 0.68 0.377403
Target:  5'- cCGCGCCccCGUCCCGGCgGacGaGCGCc -3'
miRNA:   3'- cGCGCGGa-GCGGGGCCGgUacC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 137398 0.69 0.326102
Target:  5'- -aGCGCCU-GCCC--GCCGggGGGCGCc -3'
miRNA:   3'- cgCGCGGAgCGGGgcCGGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 137265 0.67 0.404207
Target:  5'- cGCGCGCCcggUGCCCgCgggcacgcucgaggcGGCCAUGcGCGg -3'
miRNA:   3'- -CGCGCGGa--GCGGG-G---------------CCGGUACcCGCg -5'
29375 5' -65.6 NC_006151.1 + 137087 0.68 0.362205
Target:  5'- -gGCGCCagGCCuucgcggugCUGGCCGgggacgccuggGGGCGCg -3'
miRNA:   3'- cgCGCGGagCGG---------GGCCGGUa----------CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.