Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 68850 | 0.67 | 0.559043 |
Target: 5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3' miRNA: 3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 59353 | 0.67 | 0.560006 |
Target: 5'- aGGg-CCGCGcGCACg-GGGCGCCGc -3' miRNA: 3'- gCCgaGGCGCuCGUGgaCCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 81546 | 0.67 | 0.560006 |
Target: 5'- gCGcGCUCCGCGGuGCACaUGGcCGUgGUg -3' miRNA: 3'- -GC-CGAGGCGCU-CGUGgACCuGCGgCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 124985 | 0.68 | 0.503217 |
Target: 5'- -uGCagCGCGuGCACCUGGGCGaCUGc -3' miRNA: 3'- gcCGagGCGCuCGUGGACCUGC-GGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 53571 | 0.68 | 0.503217 |
Target: 5'- uGGCUccCCGCGAGCAC----GCGCCGc -3' miRNA: 3'- gCCGA--GGCGCUCGUGgaccUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 103303 | 0.68 | 0.493987 |
Target: 5'- gCGGCUCgCGCG-GCGC---GACGCCGa -3' miRNA: 3'- -GCCGAG-GCGCuCGUGgacCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 103508 | 0.68 | 0.493987 |
Target: 5'- -nGCUaCCGCGAGCugCUG-ACGuCCGa -3' miRNA: 3'- gcCGA-GGCGCUCGugGACcUGC-GGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 100599 | 0.68 | 0.493987 |
Target: 5'- gCGGC-CCGUgGAGCGcuuCCUGGcGCGCUGg -3' miRNA: 3'- -GCCGaGGCG-CUCGU---GGACC-UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 98360 | 0.68 | 0.493987 |
Target: 5'- gGGCgUgCGCGGGC-UCUGGGCGCgCGc -3' miRNA: 3'- gCCG-AgGCGCUCGuGGACCUGCG-GCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 82328 | 0.68 | 0.493068 |
Target: 5'- aCGGCcaccUCCGCGGGCcacaccgccGCCgUGGuguacguGCGCCGg -3' miRNA: 3'- -GCCG----AGGCGCUCG---------UGG-ACC-------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 57722 | 0.68 | 0.503217 |
Target: 5'- cCGGCUugaCCGCGcGCGCCcgcacGGcGCGCCGc -3' miRNA: 3'- -GCCGA---GGCGCuCGUGGa----CC-UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 18684 | 0.68 | 0.512522 |
Target: 5'- gGGUUCCaCGGGCGCgCgGGcgGCGCCGg -3' miRNA: 3'- gCCGAGGcGCUCGUG-GaCC--UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 40030 | 0.68 | 0.512522 |
Target: 5'- -aGCgUCCGCGc-CGCCgccggGGGCGCCGUg -3' miRNA: 3'- gcCG-AGGCGCucGUGGa----CCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 133480 | 0.68 | 0.512522 |
Target: 5'- aGGCggCCGCGGGCgucACCUuggcggcgcgggGGGCGCgGg -3' miRNA: 3'- gCCGa-GGCGCUCG---UGGA------------CCUGCGgCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 29068 | 0.68 | 0.512522 |
Target: 5'- gCGGCgCCGCGGGC-CCcGaGACgGCCGc -3' miRNA: 3'- -GCCGaGGCGCUCGuGGaC-CUG-CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 52481 | 0.68 | 0.512522 |
Target: 5'- aGGCcgCCGUGAcgGCCUcGGGCGCCa- -3' miRNA: 3'- gCCGa-GGCGCUcgUGGA-CCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 55012 | 0.68 | 0.512522 |
Target: 5'- gGGCgcaagcCCGCcgagGGGCACCcGGccgGCGCCGUg -3' miRNA: 3'- gCCGa-----GGCG----CUCGUGGaCC---UGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 57536 | 0.68 | 0.512522 |
Target: 5'- cCGGCgcggCCGCGGGCACgU---CGCCGa -3' miRNA: 3'- -GCCGa---GGCGCUCGUGgAccuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 68955 | 0.68 | 0.512522 |
Target: 5'- gCGGCU-CGCGGcGCACggaCUcgcGGACGCCGg -3' miRNA: 3'- -GCCGAgGCGCU-CGUG---GA---CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 129192 | 0.68 | 0.484834 |
Target: 5'- aCGGCcgCCGUcAGCACCUccccGGGgGCCGc -3' miRNA: 3'- -GCCGa-GGCGcUCGUGGA----CCUgCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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