miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 68955 0.68 0.512522
Target:  5'- gCGGCU-CGCGGcGCACggaCUcgcGGACGCCGg -3'
miRNA:   3'- -GCCGAgGCGCU-CGUG---GA---CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 57536 0.68 0.512522
Target:  5'- cCGGCgcggCCGCGGGCACgU---CGCCGa -3'
miRNA:   3'- -GCCGa---GGCGCUCGUGgAccuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 55012 0.68 0.512522
Target:  5'- gGGCgcaagcCCGCcgagGGGCACCcGGccgGCGCCGUg -3'
miRNA:   3'- gCCGa-----GGCG----CUCGUGGaCC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 52481 0.68 0.512522
Target:  5'- aGGCcgCCGUGAcgGCCUcGGGCGCCa- -3'
miRNA:   3'- gCCGa-GGCGCUcgUGGA-CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 29068 0.68 0.512522
Target:  5'- gCGGCgCCGCGGGC-CCcGaGACgGCCGc -3'
miRNA:   3'- -GCCGaGGCGCUCGuGGaC-CUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 133480 0.68 0.512522
Target:  5'- aGGCggCCGCGGGCgucACCUuggcggcgcgggGGGCGCgGg -3'
miRNA:   3'- gCCGa-GGCGCUCG---UGGA------------CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 132597 0.68 0.516264
Target:  5'- gGGCUCCGCcccGGGCACCcccaGGucgacgcucgcgucCGCCGUc -3'
miRNA:   3'- gCCGAGGCG---CUCGUGGa---CCu-------------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 18684 0.68 0.512522
Target:  5'- gGGUUCCaCGGGCGCgCgGGcgGCGCCGg -3'
miRNA:   3'- gCCGAGGcGCUCGUG-GaCC--UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 57722 0.68 0.503217
Target:  5'- cCGGCUugaCCGCGcGCGCCcgcacGGcGCGCCGc -3'
miRNA:   3'- -GCCGA---GGCGCuCGUGGa----CC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 124985 0.68 0.503217
Target:  5'- -uGCagCGCGuGCACCUGGGCGaCUGc -3'
miRNA:   3'- gcCGagGCGCuCGUGGACCUGC-GGCa -5'
29376 5' -62.6 NC_006151.1 + 53571 0.68 0.503217
Target:  5'- uGGCUccCCGCGAGCAC----GCGCCGc -3'
miRNA:   3'- gCCGA--GGCGCUCGUGgaccUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103303 0.68 0.493987
Target:  5'- gCGGCUCgCGCG-GCGC---GACGCCGa -3'
miRNA:   3'- -GCCGAG-GCGCuCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 98395 0.67 0.557118
Target:  5'- uGGCcugCCGCGccuacgucgagacgGGCACCUGcgaGGCGgCCGUg -3'
miRNA:   3'- gCCGa--GGCGC--------------UCGUGGAC---CUGC-GGCA- -5'
29376 5' -62.6 NC_006151.1 + 90955 0.67 0.554235
Target:  5'- gGGCUCCGUcgcgccgaccgcgucGAcGC-CCUGG-CGCCGc -3'
miRNA:   3'- gCCGAGGCG---------------CU-CGuGGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 119382 0.67 0.550397
Target:  5'- gCGGCUucugcCCGC-AGCugCUGG-CGCgCGUg -3'
miRNA:   3'- -GCCGA-----GGCGcUCGugGACCuGCG-GCA- -5'
29376 5' -62.6 NC_006151.1 + 56129 0.67 0.559043
Target:  5'- aGGCcuUCCGCGGGUucGCCUucgcgguggucacGGcCGCCGa -3'
miRNA:   3'- gCCG--AGGCGCUCG--UGGA-------------CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 68850 0.67 0.559043
Target:  5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3'
miRNA:   3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 59353 0.67 0.560006
Target:  5'- aGGg-CCGCGcGCACg-GGGCGCCGc -3'
miRNA:   3'- gCCgaGGCGCuCGUGgaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 133345 0.67 0.550397
Target:  5'- cCGGUUCCGCG-GCGgCggUGGugGUgGUg -3'
miRNA:   3'- -GCCGAGGCGCuCGUgG--ACCugCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 64429 0.67 0.550397
Target:  5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3'
miRNA:   3'- gcCGAGGCGCuCGUGgACCuGCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.