Results 121 - 140 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 137703 | 0.67 | 0.569661 |
Target: 5'- gGGCuUCCGCGuguGCAcgcCCUGccguCGCCGUa -3' miRNA: 3'- gCCG-AGGCGCu--CGU---GGACcu--GCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 65191 | 0.67 | 0.569661 |
Target: 5'- gCGGgUCCGCGAGCGCgCUGcGCGa-GUu -3' miRNA: 3'- -GCCgAGGCGCUCGUG-GACcUGCggCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 69458 | 0.67 | 0.569661 |
Target: 5'- uCGcGCgCCGCGGGCGCC-GGcaccguCGCCGc -3' miRNA: 3'- -GC-CGaGGCGCUCGUGGaCCu-----GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 100488 | 0.67 | 0.569661 |
Target: 5'- gGGC-CUGCaGGCGCCcguguuccGGACGCUGUg -3' miRNA: 3'- gCCGaGGCGcUCGUGGa-------CCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 102470 | 0.67 | 0.573535 |
Target: 5'- gGGCUCCuacgcgcagcucucgGCGuGCuuCaUGGACGCCGc -3' miRNA: 3'- gCCGAGG---------------CGCuCGugG-ACCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 68850 | 0.67 | 0.559043 |
Target: 5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3' miRNA: 3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 56129 | 0.67 | 0.559043 |
Target: 5'- aGGCcuUCCGCGGGUucGCCUucgcgguggucacGGcCGCCGa -3' miRNA: 3'- gCCG--AGGCGCUCG--UGGA-------------CCuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 98395 | 0.67 | 0.557118 |
Target: 5'- uGGCcugCCGCGccuacgucgagacgGGCACCUGcgaGGCGgCCGUg -3' miRNA: 3'- gCCGa--GGCGC--------------UCGUGGAC---CUGC-GGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 118752 | 0.67 | 0.521897 |
Target: 5'- cCGGCggCCGUGccacgcgcgugcGGaACCUGGACGCgGUg -3' miRNA: 3'- -GCCGa-GGCGC------------UCgUGGACCUGCGgCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 81546 | 0.67 | 0.560006 |
Target: 5'- gCGcGCUCCGCGGuGCACaUGGcCGUgGUg -3' miRNA: 3'- -GC-CGAGGCGCU-CGUGgACCuGCGgCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 44166 | 0.67 | 0.521897 |
Target: 5'- aCGuGCccCUGgGAGCACCgcgGGuCGCCGUc -3' miRNA: 3'- -GC-CGa-GGCgCUCGUGGa--CCuGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5615 | 0.67 | 0.521897 |
Target: 5'- cCGGCggaGgGGGCGCCgccgccgccGGGCGCCGa -3' miRNA: 3'- -GCCGaggCgCUCGUGGa--------CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 31593 | 0.67 | 0.521897 |
Target: 5'- gCGcGCUCCGCGcucccccGcCGCCUGGgcggggaugccGCGCCGg -3' miRNA: 3'- -GC-CGAGGCGCu------C-GUGGACC-----------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 39340 | 0.67 | 0.521897 |
Target: 5'- gCGGCUCgGCGcGGCGC---GGCGCCGg -3' miRNA: 3'- -GCCGAGgCGC-UCGUGgacCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 119382 | 0.67 | 0.550397 |
Target: 5'- gCGGCUucugcCCGC-AGCugCUGG-CGCgCGUg -3' miRNA: 3'- -GCCGA-----GGCGcUCGugGACCuGCG-GCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 58335 | 0.67 | 0.550397 |
Target: 5'- cCGGcCUCCGCGuaGGCGCgcgcgaagCUGGucCGCCGc -3' miRNA: 3'- -GCC-GAGGCGC--UCGUG--------GACCu-GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 64429 | 0.67 | 0.550397 |
Target: 5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3' miRNA: 3'- gcCGAGGCGCuCGUGgACCuGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 133345 | 0.67 | 0.550397 |
Target: 5'- cCGGUUCCGCG-GCGgCggUGGugGUgGUg -3' miRNA: 3'- -GCCGAGGCGCuCGUgG--ACCugCGgCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 98039 | 0.67 | 0.521897 |
Target: 5'- uGGCgcagCGCGAGCACCaccagccccGGGCGCuCGg -3' miRNA: 3'- gCCGag--GCGCUCGUGGa--------CCUGCG-GCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 104195 | 0.67 | 0.518139 |
Target: 5'- uCGGCgccaacgccgagaCCGUGAcCACggcgCUGGACGCCGUg -3' miRNA: 3'- -GCCGa------------GGCGCUcGUG----GACCUGCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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