miRNA display CGI


Results 121 - 140 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 137703 0.67 0.569661
Target:  5'- gGGCuUCCGCGuguGCAcgcCCUGccguCGCCGUa -3'
miRNA:   3'- gCCG-AGGCGCu--CGU---GGACcu--GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 65191 0.67 0.569661
Target:  5'- gCGGgUCCGCGAGCGCgCUGcGCGa-GUu -3'
miRNA:   3'- -GCCgAGGCGCUCGUG-GACcUGCggCA- -5'
29376 5' -62.6 NC_006151.1 + 69458 0.67 0.569661
Target:  5'- uCGcGCgCCGCGGGCGCC-GGcaccguCGCCGc -3'
miRNA:   3'- -GC-CGaGGCGCUCGUGGaCCu-----GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 100488 0.67 0.569661
Target:  5'- gGGC-CUGCaGGCGCCcguguuccGGACGCUGUg -3'
miRNA:   3'- gCCGaGGCGcUCGUGGa-------CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 102470 0.67 0.573535
Target:  5'- gGGCUCCuacgcgcagcucucgGCGuGCuuCaUGGACGCCGc -3'
miRNA:   3'- gCCGAGG---------------CGCuCGugG-ACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 68850 0.67 0.559043
Target:  5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3'
miRNA:   3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 56129 0.67 0.559043
Target:  5'- aGGCcuUCCGCGGGUucGCCUucgcgguggucacGGcCGCCGa -3'
miRNA:   3'- gCCG--AGGCGCUCG--UGGA-------------CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 98395 0.67 0.557118
Target:  5'- uGGCcugCCGCGccuacgucgagacgGGCACCUGcgaGGCGgCCGUg -3'
miRNA:   3'- gCCGa--GGCGC--------------UCGUGGAC---CUGC-GGCA- -5'
29376 5' -62.6 NC_006151.1 + 118752 0.67 0.521897
Target:  5'- cCGGCggCCGUGccacgcgcgugcGGaACCUGGACGCgGUg -3'
miRNA:   3'- -GCCGa-GGCGC------------UCgUGGACCUGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 81546 0.67 0.560006
Target:  5'- gCGcGCUCCGCGGuGCACaUGGcCGUgGUg -3'
miRNA:   3'- -GC-CGAGGCGCU-CGUGgACCuGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 44166 0.67 0.521897
Target:  5'- aCGuGCccCUGgGAGCACCgcgGGuCGCCGUc -3'
miRNA:   3'- -GC-CGa-GGCgCUCGUGGa--CCuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 5615 0.67 0.521897
Target:  5'- cCGGCggaGgGGGCGCCgccgccgccGGGCGCCGa -3'
miRNA:   3'- -GCCGaggCgCUCGUGGa--------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 31593 0.67 0.521897
Target:  5'- gCGcGCUCCGCGcucccccGcCGCCUGGgcggggaugccGCGCCGg -3'
miRNA:   3'- -GC-CGAGGCGCu------C-GUGGACC-----------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 39340 0.67 0.521897
Target:  5'- gCGGCUCgGCGcGGCGC---GGCGCCGg -3'
miRNA:   3'- -GCCGAGgCGC-UCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 119382 0.67 0.550397
Target:  5'- gCGGCUucugcCCGC-AGCugCUGG-CGCgCGUg -3'
miRNA:   3'- -GCCGA-----GGCGcUCGugGACCuGCG-GCA- -5'
29376 5' -62.6 NC_006151.1 + 58335 0.67 0.550397
Target:  5'- cCGGcCUCCGCGuaGGCGCgcgcgaagCUGGucCGCCGc -3'
miRNA:   3'- -GCC-GAGGCGC--UCGUG--------GACCu-GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 64429 0.67 0.550397
Target:  5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3'
miRNA:   3'- gcCGAGGCGCuCGUGgACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 133345 0.67 0.550397
Target:  5'- cCGGUUCCGCG-GCGgCggUGGugGUgGUg -3'
miRNA:   3'- -GCCGAGGCGCuCGUgG--ACCugCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 98039 0.67 0.521897
Target:  5'- uGGCgcagCGCGAGCACCaccagccccGGGCGCuCGg -3'
miRNA:   3'- gCCGag--GCGCUCGUGGa--------CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 104195 0.67 0.518139
Target:  5'- uCGGCgccaacgccgagaCCGUGAcCACggcgCUGGACGCCGUg -3'
miRNA:   3'- -GCCGa------------GGCGCUcGUG----GACCUGCGGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.