miRNA display CGI


Results 141 - 160 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 104195 0.67 0.518139
Target:  5'- uCGGCgccaacgccgagaCCGUGAcCACggcgCUGGACGCCGUg -3'
miRNA:   3'- -GCCGa------------GGCGCUcGUG----GACCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 64429 0.67 0.550397
Target:  5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3'
miRNA:   3'- gcCGAGGCGCuCGUGgACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 59353 0.67 0.560006
Target:  5'- aGGg-CCGCGcGCACg-GGGCGCCGc -3'
miRNA:   3'- gCCgaGGCGCuCGUGgaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 127994 0.67 0.521897
Target:  5'- gCGGCUCCGCGucGCGgUcgcgGGGCGgCGg -3'
miRNA:   3'- -GCCGAGGCGCu-CGUgGa---CCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 69141 0.67 0.550397
Target:  5'- gGGCg-CGCGGGUGCUc-GACGCCGUg -3'
miRNA:   3'- gCCGagGCGCUCGUGGacCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 55218 0.67 0.550397
Target:  5'- gGGCUU--CGGGCACCacGGCGCCGg -3'
miRNA:   3'- gCCGAGgcGCUCGUGGacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 83359 0.67 0.540839
Target:  5'- cCGGCgcgCgCGCGGGCGCgcaGGCGCCGc -3'
miRNA:   3'- -GCCGa--G-GCGCUCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 136834 0.67 0.540839
Target:  5'- gGGCUCUGCGAcGCgGCCgccGGccucgcGCGCCGc -3'
miRNA:   3'- gCCGAGGCGCU-CG-UGGa--CC------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 59506 0.67 0.540839
Target:  5'- gCGGcCUCCGCGAcGCGCgCgcaGCGCCGc -3'
miRNA:   3'- -GCC-GAGGCGCU-CGUG-GaccUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 136994 0.67 0.540839
Target:  5'- gCGGCgggCgCGCGcGCACggcgCUGGGCGCCc- -3'
miRNA:   3'- -GCCGa--G-GCGCuCGUG----GACCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 33206 0.67 0.540839
Target:  5'- cCGGCgcccCCG-GAGCACgCgGGGCGCCc- -3'
miRNA:   3'- -GCCGa---GGCgCUCGUG-GaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 23905 0.67 0.540839
Target:  5'- gGGCgucggUCGCGGGC-CCgacgGGcCGCCGg -3'
miRNA:   3'- gCCGa----GGCGCUCGuGGa---CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 88396 0.67 0.531337
Target:  5'- gCGGCguccgcggCCGCGAG-GCCcgGGACGuCCGc -3'
miRNA:   3'- -GCCGa-------GGCGCUCgUGGa-CCUGC-GGCa -5'
29376 5' -62.6 NC_006151.1 + 138251 0.66 0.628234
Target:  5'- gGGCgcgaCCGCGcAGCGggUGGugGCCa- -3'
miRNA:   3'- gCCGa---GGCGC-UCGUggACCugCGGca -5'
29376 5' -62.6 NC_006151.1 + 55077 0.66 0.608629
Target:  5'- gGGCUcggCCGCGGcGCGCCUcGuGCGCCu- -3'
miRNA:   3'- gCCGA---GGCGCU-CGUGGA-CcUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 39966 0.66 0.608629
Target:  5'- gGGCgccgucgccgCCGCGGGCGCCc---CGCCGg -3'
miRNA:   3'- gCCGa---------GGCGCUCGUGGaccuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 101453 0.66 0.59787
Target:  5'- uCGGCgCCGUGGGCcugggccucuaccGCCgcgGcGACGUCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCG-------------UGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78271 0.66 0.589087
Target:  5'- uGGC-CCGCuGGCACCUGccgagcugcuACGCCGc -3'
miRNA:   3'- gCCGaGGCGcUCGUGGACc---------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73451 0.66 0.589087
Target:  5'- gGGCUgCGUGAGCugCaGGugcagccCGCCGc -3'
miRNA:   3'- gCCGAgGCGCUCGugGaCCu------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 102141 0.66 0.589087
Target:  5'- gGGCg-CGcCGGGCugCUGGAgcgcuuCGCCGa -3'
miRNA:   3'- gCCGagGC-GCUCGugGACCU------GCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.