Results 161 - 180 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 25092 | 0.66 | 0.617446 |
Target: 5'- cCGGCgucggCCauuguugcugcguGCGAGCGCUgggcgUGGACGCgCGa -3' miRNA: 3'- -GCCGa----GG-------------CGCUCGUGG-----ACCUGCG-GCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 73591 | 0.66 | 0.618426 |
Target: 5'- gGGCgaagCCGgGGuGCAgCUGG-CGCCGc -3' miRNA: 3'- gCCGa---GGCgCU-CGUgGACCuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 138251 | 0.66 | 0.628234 |
Target: 5'- gGGCgcgaCCGCGcAGCGggUGGugGCCa- -3' miRNA: 3'- gCCGa---GGCGC-UCGUggACCugCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 13688 | 0.66 | 0.628234 |
Target: 5'- cCGGCcaaUGCGGGCuCCcgGGACGCgGg -3' miRNA: 3'- -GCCGag-GCGCUCGuGGa-CCUGCGgCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 37954 | 0.66 | 0.628234 |
Target: 5'- gCGuGCcCCGCGAGCuggcGGACGCCu- -3' miRNA: 3'- -GC-CGaGGCGCUCGuggaCCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 76174 | 0.66 | 0.628234 |
Target: 5'- -uGCg-CGCGAGCugCUGGAUGgCGc -3' miRNA: 3'- gcCGagGCGCUCGugGACCUGCgGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5697 | 0.66 | 0.598847 |
Target: 5'- cCGGCgCUGCGGccaccGCugCUGGcugugcuggugGCGCCGg -3' miRNA: 3'- -GCCGaGGCGCU-----CGugGACC-----------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 86421 | 0.66 | 0.598847 |
Target: 5'- uCGGCgUCCcuguccucGCG-GCGCCUGG-CGCCc- -3' miRNA: 3'- -GCCG-AGG--------CGCuCGUGGACCuGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 87575 | 0.66 | 0.578386 |
Target: 5'- cCGGCggacgucUCCGCcGGCACCaucGACGCCa- -3' miRNA: 3'- -GCCG-------AGGCGcUCGUGGac-CUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 24494 | 0.66 | 0.579357 |
Target: 5'- uGGUcCCgGCGAGC-CCguaaaaguUGGGCGCCGc -3' miRNA: 3'- gCCGaGG-CGCUCGuGG--------ACCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 31341 | 0.66 | 0.579357 |
Target: 5'- uCGGCgCCGUGGGCccgACCccGGuccGCGCCGg -3' miRNA: 3'- -GCCGaGGCGCUCG---UGGa-CC---UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 49841 | 0.66 | 0.579357 |
Target: 5'- aCGGCggCgGCGGGCccGCgCUGGGCGCagcaCGUg -3' miRNA: 3'- -GCCGa-GgCGCUCG--UG-GACCUGCG----GCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 71965 | 0.66 | 0.579357 |
Target: 5'- uCGGCguugUCGCGgugcggcgggGGCAgCUGGuaGCGCCGg -3' miRNA: 3'- -GCCGa---GGCGC----------UCGUgGACC--UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 102141 | 0.66 | 0.589087 |
Target: 5'- gGGCg-CGcCGGGCugCUGGAgcgcuuCGCCGa -3' miRNA: 3'- gCCGagGC-GCUCGugGACCU------GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 20979 | 0.66 | 0.589087 |
Target: 5'- gGGCgcgUCGcCGGGCACgaGGACGgCGc -3' miRNA: 3'- gCCGa--GGC-GCUCGUGgaCCUGCgGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 73451 | 0.66 | 0.589087 |
Target: 5'- gGGCUgCGUGAGCugCaGGugcagccCGCCGc -3' miRNA: 3'- gCCGAgGCGCUCGugGaCCu------GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 78271 | 0.66 | 0.589087 |
Target: 5'- uGGC-CCGCuGGCACCUGccgagcugcuACGCCGc -3' miRNA: 3'- gCCGaGGCGcUCGUGGACc---------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 101453 | 0.66 | 0.59787 |
Target: 5'- uCGGCgCCGUGGGCcugggccucuaccGCCgcgGcGACGUCGUg -3' miRNA: 3'- -GCCGaGGCGCUCG-------------UGGa--C-CUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3300 | 0.66 | 0.598847 |
Target: 5'- nGGgUCgaagGUGAGCGCC-GGGCGCCa- -3' miRNA: 3'- gCCgAGg---CGCUCGUGGaCCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 39864 | 0.66 | 0.598847 |
Target: 5'- cCGaGCUCCGCG-GCcCCgaGGGCcuGCCGg -3' miRNA: 3'- -GC-CGAGGCGCuCGuGGa-CCUG--CGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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