miRNA display CGI


Results 61 - 80 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 103387 0.69 0.406513
Target:  5'- gCGGCUgCGCGcGCugCUGGGCGaCUu- -3'
miRNA:   3'- -GCCGAgGCGCuCGugGACCUGC-GGca -5'
29376 5' -62.6 NC_006151.1 + 112602 0.69 0.414823
Target:  5'- aGGCcgCCGCG-GCGCCgcuGGCGCUGg -3'
miRNA:   3'- gCCGa-GGCGCuCGUGGac-CUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 106658 0.69 0.418176
Target:  5'- gCGGCgcacgugcgcgaggCCGCGGcgcucggcGCGCC-GGGCGCCGg -3'
miRNA:   3'- -GCCGa-------------GGCGCU--------CGUGGaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 55398 0.69 0.423236
Target:  5'- gCGGCgccugCGCGAGCAggcCCUGcGCGCCGc -3'
miRNA:   3'- -GCCGag---GCGCUCGU---GGACcUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5023 0.69 0.423236
Target:  5'- gGGCUCCG-GGGCcgggGCCggGGAgGCCGc -3'
miRNA:   3'- gCCGAGGCgCUCG----UGGa-CCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 31683 0.69 0.430895
Target:  5'- gGGCcgggCCGcCGAGCcgGCCgcgccauUGGGCGCCGg -3'
miRNA:   3'- gCCGa---GGC-GCUCG--UGG-------ACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 64929 0.69 0.431751
Target:  5'- aCGGCguacUCGCGcgucAGCGCCUGGccGCGCUGc -3'
miRNA:   3'- -GCCGa---GGCGC----UCGUGGACC--UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 27172 0.69 0.440365
Target:  5'- aGGCgCCGCGugucggGGCGCCaGGGgGCCGc -3'
miRNA:   3'- gCCGaGGCGC------UCGUGGaCCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 60215 0.69 0.440365
Target:  5'- gGGCUcgCCGCGcGCGCC-GGA-GCCGUc -3'
miRNA:   3'- gCCGA--GGCGCuCGUGGaCCUgCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 85169 0.69 0.440365
Target:  5'- cCGGCgCCGCGGGCGCCgccgcccCGCUGg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGGaccu---GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103851 0.69 0.449076
Target:  5'- gCGGCUgCGCGcGCAgcCCgacgaggGGACGCUGg -3'
miRNA:   3'- -GCCGAgGCGCuCGU--GGa------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 128228 0.69 0.449076
Target:  5'- aCGaGCU-CGUGGGCGCCaGGuCGCCGa -3'
miRNA:   3'- -GC-CGAgGCGCUCGUGGaCCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 71582 0.69 0.449076
Target:  5'- gGGCauccUCCGCGGGCGCC---GCGUCGUc -3'
miRNA:   3'- gCCG----AGGCGCUCGUGGaccUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 107459 0.69 0.457881
Target:  5'- -uGCUCgGCGAcgACCUGGugGCCa- -3'
miRNA:   3'- gcCGAGgCGCUcgUGGACCugCGGca -5'
29376 5' -62.6 NC_006151.1 + 97365 0.69 0.457881
Target:  5'- gCGGCggCgGCGGGCGCggcggGGGCGUCGg -3'
miRNA:   3'- -GCCGa-GgCGCUCGUGga---CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 84565 0.69 0.457881
Target:  5'- gGGCUUCaGCGAGgGCCUcGACGCgCGc -3'
miRNA:   3'- gCCGAGG-CGCUCgUGGAcCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 83436 0.69 0.457881
Target:  5'- gGGCUCCcCGGGCAgCgUGGcCGCCa- -3'
miRNA:   3'- gCCGAGGcGCUCGU-GgACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 100364 0.68 0.466778
Target:  5'- uGGacgCCGUGGGCGCCUuccGCGCCGa -3'
miRNA:   3'- gCCga-GGCGCUCGUGGAcc-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 118926 0.68 0.466778
Target:  5'- uGGCgUCCGUcauGAGCGCCgacGcGGCGCUGUc -3'
miRNA:   3'- gCCG-AGGCG---CUCGUGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 130410 0.68 0.466778
Target:  5'- -cGC-CCGCGAGCGCg-GGcGCGCCGa -3'
miRNA:   3'- gcCGaGGCGCUCGUGgaCC-UGCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.