miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 53571 0.68 0.503217
Target:  5'- uGGCUccCCGCGAGCAC----GCGCCGc -3'
miRNA:   3'- gCCGA--GGCGCUCGUGgaccUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 124985 0.68 0.503217
Target:  5'- -uGCagCGCGuGCACCUGGGCGaCUGc -3'
miRNA:   3'- gcCGagGCGCuCGUGGACCUGC-GGCa -5'
29376 5' -62.6 NC_006151.1 + 57722 0.68 0.503217
Target:  5'- cCGGCUugaCCGCGcGCGCCcgcacGGcGCGCCGc -3'
miRNA:   3'- -GCCGA---GGCGCuCGUGGa----CC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 133480 0.68 0.512522
Target:  5'- aGGCggCCGCGGGCgucACCUuggcggcgcgggGGGCGCgGg -3'
miRNA:   3'- gCCGa-GGCGCUCG---UGGA------------CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 18684 0.68 0.512522
Target:  5'- gGGUUCCaCGGGCGCgCgGGcgGCGCCGg -3'
miRNA:   3'- gCCGAGGcGCUCGUG-GaCC--UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 57536 0.68 0.512522
Target:  5'- cCGGCgcggCCGCGGGCACgU---CGCCGa -3'
miRNA:   3'- -GCCGa---GGCGCUCGUGgAccuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 55012 0.68 0.512522
Target:  5'- gGGCgcaagcCCGCcgagGGGCACCcGGccgGCGCCGUg -3'
miRNA:   3'- gCCGa-----GGCG----CUCGUGGaCC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 52481 0.68 0.512522
Target:  5'- aGGCcgCCGUGAcgGCCUcGGGCGCCa- -3'
miRNA:   3'- gCCGa-GGCGCUcgUGGA-CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 40030 0.68 0.512522
Target:  5'- -aGCgUCCGCGc-CGCCgccggGGGCGCCGUg -3'
miRNA:   3'- gcCG-AGGCGCucGUGGa----CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 29068 0.68 0.512522
Target:  5'- gCGGCgCCGCGGGC-CCcGaGACgGCCGc -3'
miRNA:   3'- -GCCGaGGCGCUCGuGGaC-CUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 68955 0.68 0.512522
Target:  5'- gCGGCU-CGCGGcGCACggaCUcgcGGACGCCGg -3'
miRNA:   3'- -GCCGAgGCGCU-CGUG---GA---CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 132597 0.68 0.516264
Target:  5'- gGGCUCCGCcccGGGCACCcccaGGucgacgcucgcgucCGCCGUc -3'
miRNA:   3'- gCCGAGGCG---CUCGUGGa---CCu-------------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 104195 0.67 0.518139
Target:  5'- uCGGCgccaacgccgagaCCGUGAcCACggcgCUGGACGCCGUg -3'
miRNA:   3'- -GCCGa------------GGCGCUcGUG----GACCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 127994 0.67 0.521897
Target:  5'- gCGGCUCCGCGucGCGgUcgcgGGGCGgCGg -3'
miRNA:   3'- -GCCGAGGCGCu-CGUgGa---CCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 127565 0.67 0.521897
Target:  5'- uGGCcgCCGCcGGCGCCUcGuuCGCCGUc -3'
miRNA:   3'- gCCGa-GGCGcUCGUGGA-CcuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 118752 0.67 0.521897
Target:  5'- cCGGCggCCGUGccacgcgcgugcGGaACCUGGACGCgGUg -3'
miRNA:   3'- -GCCGa-GGCGC------------UCgUGGACCUGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 98039 0.67 0.521897
Target:  5'- uGGCgcagCGCGAGCACCaccagccccGGGCGCuCGg -3'
miRNA:   3'- gCCGag--GCGCUCGUGGa--------CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 39340 0.67 0.521897
Target:  5'- gCGGCUCgGCGcGGCGC---GGCGCCGg -3'
miRNA:   3'- -GCCGAGgCGC-UCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5615 0.67 0.521897
Target:  5'- cCGGCggaGgGGGCGCCgccgccgccGGGCGCCGa -3'
miRNA:   3'- -GCCGaggCgCUCGUGGa--------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 44166 0.67 0.521897
Target:  5'- aCGuGCccCUGgGAGCACCgcgGGuCGCCGUc -3'
miRNA:   3'- -GC-CGa-GGCgCUCGUGGa--CCuGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.