Results 121 - 140 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 44166 | 0.67 | 0.521897 |
Target: 5'- aCGuGCccCUGgGAGCACCgcgGGuCGCCGUc -3' miRNA: 3'- -GC-CGa-GGCgCUCGUGGa--CCuGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 88396 | 0.67 | 0.531337 |
Target: 5'- gCGGCguccgcggCCGCGAG-GCCcgGGACGuCCGc -3' miRNA: 3'- -GCCGa-------GGCGCUCgUGGa-CCUGC-GGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 136834 | 0.67 | 0.540839 |
Target: 5'- gGGCUCUGCGAcGCgGCCgccGGccucgcGCGCCGc -3' miRNA: 3'- gCCGAGGCGCU-CG-UGGa--CC------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 83359 | 0.67 | 0.540839 |
Target: 5'- cCGGCgcgCgCGCGGGCGCgcaGGCGCCGc -3' miRNA: 3'- -GCCGa--G-GCGCUCGUGgacCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 19446 | 0.67 | 0.540839 |
Target: 5'- gCGGCUcgcgcuggagCCGCG-GCACCUcGGGCGgCa- -3' miRNA: 3'- -GCCGA----------GGCGCuCGUGGA-CCUGCgGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 59506 | 0.67 | 0.540839 |
Target: 5'- gCGGcCUCCGCGAcGCGCgCgcaGCGCCGc -3' miRNA: 3'- -GCC-GAGGCGCU-CGUG-GaccUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 136994 | 0.67 | 0.540839 |
Target: 5'- gCGGCgggCgCGCGcGCACggcgCUGGGCGCCc- -3' miRNA: 3'- -GCCGa--G-GCGCuCGUG----GACCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 23905 | 0.67 | 0.540839 |
Target: 5'- gGGCgucggUCGCGGGC-CCgacgGGcCGCCGg -3' miRNA: 3'- gCCGa----GGCGCUCGuGGa---CCuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 33206 | 0.67 | 0.540839 |
Target: 5'- cCGGCgcccCCG-GAGCACgCgGGGCGCCc- -3' miRNA: 3'- -GCCGa---GGCgCUCGUG-GaCCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 133345 | 0.67 | 0.550397 |
Target: 5'- cCGGUUCCGCG-GCGgCggUGGugGUgGUg -3' miRNA: 3'- -GCCGAGGCGCuCGUgG--ACCugCGgCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 64429 | 0.67 | 0.550397 |
Target: 5'- -cGCUCUGCGcGCGCgUGGcCGCCu- -3' miRNA: 3'- gcCGAGGCGCuCGUGgACCuGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 119382 | 0.67 | 0.550397 |
Target: 5'- gCGGCUucugcCCGC-AGCugCUGG-CGCgCGUg -3' miRNA: 3'- -GCCGA-----GGCGcUCGugGACCuGCG-GCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 137093 | 0.67 | 0.550397 |
Target: 5'- aGGcCUUCGCGGuGCugGCCggGGACGCCu- -3' miRNA: 3'- gCC-GAGGCGCU-CG--UGGa-CCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 69141 | 0.67 | 0.550397 |
Target: 5'- gGGCg-CGCGGGUGCUc-GACGCCGUg -3' miRNA: 3'- gCCGagGCGCUCGUGGacCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 55218 | 0.67 | 0.550397 |
Target: 5'- gGGCUU--CGGGCACCacGGCGCCGg -3' miRNA: 3'- gCCGAGgcGCUCGUGGacCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 58335 | 0.67 | 0.550397 |
Target: 5'- cCGGcCUCCGCGuaGGCGCgcgcgaagCUGGucCGCCGc -3' miRNA: 3'- -GCC-GAGGCGC--UCGUG--------GACCu-GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 90955 | 0.67 | 0.554235 |
Target: 5'- gGGCUCCGUcgcgccgaccgcgucGAcGC-CCUGG-CGCCGc -3' miRNA: 3'- gCCGAGGCG---------------CU-CGuGGACCuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 98395 | 0.67 | 0.557118 |
Target: 5'- uGGCcugCCGCGccuacgucgagacgGGCACCUGcgaGGCGgCCGUg -3' miRNA: 3'- gCCGa--GGCGC--------------UCGUGGAC---CUGC-GGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 56129 | 0.67 | 0.559043 |
Target: 5'- aGGCcuUCCGCGGGUucGCCUucgcgguggucacGGcCGCCGa -3' miRNA: 3'- gCCG--AGGCGCUCG--UGGA-------------CCuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 68850 | 0.67 | 0.559043 |
Target: 5'- aGGCgCCGCGcgacgcguccagcAGCGCCgGGGCGCg-- -3' miRNA: 3'- gCCGaGGCGC-------------UCGUGGaCCUGCGgca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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