miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 3270 0.68 0.484834
Target:  5'- gCGGCgcgCgGCGAuguGCGCCaGGGCgGCCGg -3'
miRNA:   3'- -GCCGa--GgCGCU---CGUGGaCCUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 5118 0.68 0.484834
Target:  5'- gCGGCccggCGCGGGCGagugGGGCGCCGg -3'
miRNA:   3'- -GCCGag--GCGCUCGUgga-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 105705 0.68 0.484834
Target:  5'- cCGGCgcggCCGC--GCGCCUcgacGGCGCCGUg -3'
miRNA:   3'- -GCCGa---GGCGcuCGUGGAc---CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 119903 0.68 0.484834
Target:  5'- -aGCUCCGCGAcGCGCUcuacGACGCCa- -3'
miRNA:   3'- gcCGAGGCGCU-CGUGGac--CUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 129192 0.68 0.484834
Target:  5'- aCGGCcgCCGUcAGCACCUccccGGGgGCCGc -3'
miRNA:   3'- -GCCGa-GGCGcUCGUGGA----CCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 102337 0.68 0.475764
Target:  5'- aGGCg-CGCGcGCugCUGGACgugGCCGg -3'
miRNA:   3'- gCCGagGCGCuCGugGACCUG---CGGCa -5'
29376 5' -62.6 NC_006151.1 + 86584 0.68 0.475764
Target:  5'- gGGCgcgCUcCGAGCugCUGGcgcGCGCCGc -3'
miRNA:   3'- gCCGa--GGcGCUCGugGACC---UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 124035 0.68 0.475764
Target:  5'- aGGCcCCcgacgGCGAGUacggcgACCUGGACGCgCGg -3'
miRNA:   3'- gCCGaGG-----CGCUCG------UGGACCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 96168 0.68 0.475764
Target:  5'- gGGCcacgcgUCCGagccgcagagcaCGAGCGCCaugGGGCGCCGc -3'
miRNA:   3'- gCCG------AGGC------------GCUCGUGGa--CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5073 0.68 0.466778
Target:  5'- aGGCcgagggCCGCGGG-GCCgcggcGGGCGCCGg -3'
miRNA:   3'- gCCGa-----GGCGCUCgUGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 84304 0.68 0.466778
Target:  5'- gCGGCaaCGCGAGCGCgaUGGccGCGaCCGUg -3'
miRNA:   3'- -GCCGagGCGCUCGUGg-ACC--UGC-GGCA- -5'
29376 5' -62.6 NC_006151.1 + 100364 0.68 0.466778
Target:  5'- uGGacgCCGUGGGCGCCUuccGCGCCGa -3'
miRNA:   3'- gCCga-GGCGCUCGUGGAcc-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 118926 0.68 0.466778
Target:  5'- uGGCgUCCGUcauGAGCGCCgacGcGGCGCUGUc -3'
miRNA:   3'- gCCG-AGGCG---CUCGUGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 5850 0.68 0.466778
Target:  5'- aGGCUgCGgagggggaCGAGCGCCcgGGGcCGCCGg -3'
miRNA:   3'- gCCGAgGC--------GCUCGUGGa-CCU-GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 17086 0.68 0.466778
Target:  5'- cCGGgUCagGCGcGCGCCcgucgGGGCGCCGg -3'
miRNA:   3'- -GCCgAGg-CGCuCGUGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 99531 0.68 0.466778
Target:  5'- uGGCgCCGCgcccgcccacgGAGCACgUGGGCGCgGc -3'
miRNA:   3'- gCCGaGGCG-----------CUCGUGgACCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 130410 0.68 0.466778
Target:  5'- -cGC-CCGCGAGCGCg-GGcGCGCCGa -3'
miRNA:   3'- gcCGaGGCGCUCGUGgaCC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 130630 0.68 0.466778
Target:  5'- gCGGCUCa-CGAGCGCCgccGAgGCCGc -3'
miRNA:   3'- -GCCGAGgcGCUCGUGGac-CUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 97365 0.69 0.457881
Target:  5'- gCGGCggCgGCGGGCGCggcggGGGCGUCGg -3'
miRNA:   3'- -GCCGa-GgCGCUCGUGga---CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 84565 0.69 0.457881
Target:  5'- gGGCUUCaGCGAGgGCCUcGACGCgCGc -3'
miRNA:   3'- gCCGAGG-CGCUCgUGGAcCUGCG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.