miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 73218 0.76 0.160399
Target:  5'- aGGC-CCGCGGGCACCUgGGGCagcaucugGCCGa -3'
miRNA:   3'- gCCGaGGCGCUCGUGGA-CCUG--------CGGCa -5'
29376 5' -62.6 NC_006151.1 + 73451 0.66 0.589087
Target:  5'- gGGCUgCGUGAGCugCaGGugcagccCGCCGc -3'
miRNA:   3'- gCCGAgGCGCUCGugGaCCu------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73591 0.66 0.618426
Target:  5'- gGGCgaagCCGgGGuGCAgCUGG-CGCCGc -3'
miRNA:   3'- gCCGa---GGCgCU-CGUgGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 75251 0.73 0.234989
Target:  5'- aGGCgcacugcaccUCCGCGGGCuCCUGGcgcaGCGCCGc -3'
miRNA:   3'- gCCG----------AGGCGCUCGuGGACC----UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 76043 0.67 0.568694
Target:  5'- gCGG-UCCGCGAGCcggcCCUcguagagcgugaaGGGCGCCa- -3'
miRNA:   3'- -GCCgAGGCGCUCGu---GGA-------------CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 76174 0.66 0.628234
Target:  5'- -uGCg-CGCGAGCugCUGGAUGgCGc -3'
miRNA:   3'- gcCGagGCGCUCGugGACCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 77012 0.72 0.308497
Target:  5'- uGGC-CCGCGAGC-CgUGGAgCGCCa- -3'
miRNA:   3'- gCCGaGGCGCUCGuGgACCU-GCGGca -5'
29376 5' -62.6 NC_006151.1 + 78042 0.67 0.560006
Target:  5'- cCGGCgaCGCGGcGCAUCUGGGCGaCGc -3'
miRNA:   3'- -GCCGagGCGCU-CGUGGACCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 78131 0.8 0.088062
Target:  5'- gCGGCgggCCGCGGGCGCCUcGGAcgacgccucggcCGCCGUg -3'
miRNA:   3'- -GCCGa--GGCGCUCGUGGA-CCU------------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78271 0.66 0.589087
Target:  5'- uGGC-CCGCuGGCACCUGccgagcugcuACGCCGc -3'
miRNA:   3'- gCCGaGGCGcUCGUGGACc---------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 78406 0.8 0.092656
Target:  5'- gCGGCUcucgggCCGCGAGCGCCgUGGcccACGCCGUc -3'
miRNA:   3'- -GCCGA------GGCGCUCGUGG-ACC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78704 0.66 0.628234
Target:  5'- gGGCcucgucgCCGCGAcgGCGCCcgugGGGCGCgCGc -3'
miRNA:   3'- gCCGa------GGCGCU--CGUGGa---CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 81546 0.67 0.560006
Target:  5'- gCGcGCUCCGCGGuGCACaUGGcCGUgGUg -3'
miRNA:   3'- -GC-CGAGGCGCU-CGUGgACCuGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 81696 0.66 0.579357
Target:  5'- aCGGUcgCCcgcGCGAGguCCagccgGGGCGCCGg -3'
miRNA:   3'- -GCCGa-GG---CGCUCguGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 81750 0.73 0.234989
Target:  5'- gCGGCgcggagcuggUCCGCGGGCGCCaccgGGACGCg-- -3'
miRNA:   3'- -GCCG----------AGGCGCUCGUGGa---CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 82008 0.66 0.598847
Target:  5'- gGGCggCCGCGuGCGCCgccGACaGCUGg -3'
miRNA:   3'- gCCGa-GGCGCuCGUGGac-CUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 82155 0.7 0.398309
Target:  5'- gCGGCUCCagguccgaGcCGAGCGCCggGGGCGCg-- -3'
miRNA:   3'- -GCCGAGG--------C-GCUCGUGGa-CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 82328 0.68 0.493068
Target:  5'- aCGGCcaccUCCGCGGGCcacaccgccGCCgUGGuguacguGCGCCGg -3'
miRNA:   3'- -GCCG----AGGCGCUCG---------UGG-ACC-------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 82612 0.7 0.374342
Target:  5'- gGGCccgCgCGCGGGCGCCgcggUGGGCGCgGg -3'
miRNA:   3'- gCCGa--G-GCGCUCGUGG----ACCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 82697 0.71 0.351372
Target:  5'- gCGGCccCCGCGAGgGCCaGGAgGCCc- -3'
miRNA:   3'- -GCCGa-GGCGCUCgUGGaCCUgCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.