miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 83359 0.67 0.540839
Target:  5'- cCGGCgcgCgCGCGGGCGCgcaGGCGCCGc -3'
miRNA:   3'- -GCCGa--G-GCGCUCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 83436 0.69 0.457881
Target:  5'- gGGCUCCcCGGGCAgCgUGGcCGCCa- -3'
miRNA:   3'- gCCGAGGcGCUCGU-GgACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 83624 0.72 0.288604
Target:  5'- aCGGCgUCGCGAagGCgGCCUGGugcuGCGCCGUg -3'
miRNA:   3'- -GCCGaGGCGCU--CG-UGGACC----UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 84304 0.68 0.466778
Target:  5'- gCGGCaaCGCGAGCGCgaUGGccGCGaCCGUg -3'
miRNA:   3'- -GCCGagGCGCUCGUGg-ACC--UGC-GGCA- -5'
29376 5' -62.6 NC_006151.1 + 84565 0.69 0.457881
Target:  5'- gGGCUUCaGCGAGgGCCUcGACGCgCGc -3'
miRNA:   3'- gCCGAGG-CGCUCgUGGAcCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 85073 0.71 0.343941
Target:  5'- aGGC-CUGCGGGCGCCUGuACGUgGg -3'
miRNA:   3'- gCCGaGGCGCUCGUGGACcUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 85169 0.69 0.440365
Target:  5'- cCGGCgCCGCGGGCGCCgccgcccCGCUGg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGGaccu---GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 85218 0.76 0.168402
Target:  5'- gCGGgUCCcCGAGUACCUGGACGCg-- -3'
miRNA:   3'- -GCCgAGGcGCUCGUGGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 85762 0.66 0.608629
Target:  5'- gGGCUggCCGCGcuGGCG-CUGGACGCg-- -3'
miRNA:   3'- gCCGA--GGCGC--UCGUgGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 86421 0.66 0.598847
Target:  5'- uCGGCgUCCcuguccucGCG-GCGCCUGG-CGCCc- -3'
miRNA:   3'- -GCCG-AGG--------CGCuCGUGGACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 86584 0.68 0.475764
Target:  5'- gGGCgcgCUcCGAGCugCUGGcgcGCGCCGc -3'
miRNA:   3'- gCCGa--GGcGCUCGugGACC---UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 87075 0.69 0.406513
Target:  5'- aGGCgccgccccCCGCGAGCgACCUcGcCGCCGUg -3'
miRNA:   3'- gCCGa-------GGCGCUCG-UGGAcCuGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 87575 0.66 0.578386
Target:  5'- cCGGCggacgucUCCGCcGGCACCaucGACGCCa- -3'
miRNA:   3'- -GCCG-------AGGCGcUCGUGGac-CUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 88396 0.67 0.531337
Target:  5'- gCGGCguccgcggCCGCGAG-GCCcgGGACGuCCGc -3'
miRNA:   3'- -GCCGa-------GGCGCUCgUGGa-CCUGC-GGCa -5'
29376 5' -62.6 NC_006151.1 + 90630 0.71 0.351372
Target:  5'- gCGGC-CCGCGGGCGCUUGG-CGaugggCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGGACCuGCg----GCA- -5'
29376 5' -62.6 NC_006151.1 + 90955 0.67 0.554235
Target:  5'- gGGCUCCGUcgcgccgaccgcgucGAcGC-CCUGG-CGCCGc -3'
miRNA:   3'- gCCGAGGCG---------------CU-CGuGGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 94053 0.66 0.618426
Target:  5'- gCGGCgucgCCGCGgaacAGCAUcagCUGGaugGCGCUGUa -3'
miRNA:   3'- -GCCGa---GGCGC----UCGUG---GACC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 96168 0.68 0.475764
Target:  5'- gGGCcacgcgUCCGagccgcagagcaCGAGCGCCaugGGGCGCCGc -3'
miRNA:   3'- gCCG------AGGC------------GCUCGUGGa--CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 97365 0.69 0.457881
Target:  5'- gCGGCggCgGCGGGCGCggcggGGGCGUCGg -3'
miRNA:   3'- -GCCGa-GgCGCUCGUGga---CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 98039 0.67 0.521897
Target:  5'- uGGCgcagCGCGAGCACCaccagccccGGGCGCuCGg -3'
miRNA:   3'- gCCGag--GCGCUCGUGGa--------CCUGCG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.