miRNA display CGI


Results 121 - 140 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 98360 0.68 0.493987
Target:  5'- gGGCgUgCGCGGGC-UCUGGGCGCgCGc -3'
miRNA:   3'- gCCG-AgGCGCUCGuGGACCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 98395 0.67 0.557118
Target:  5'- uGGCcugCCGCGccuacgucgagacgGGCACCUGcgaGGCGgCCGUg -3'
miRNA:   3'- gCCGa--GGCGC--------------UCGUGGAC---CUGC-GGCA- -5'
29376 5' -62.6 NC_006151.1 + 98502 0.69 0.406513
Target:  5'- aCGGCcCCGCugcugGAGCuCCUGGGgGUCGUc -3'
miRNA:   3'- -GCCGaGGCG-----CUCGuGGACCUgCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 99488 0.66 0.618426
Target:  5'- gGGCUCCccgagaaggGCgugGAGCACgUGGuGCGCCa- -3'
miRNA:   3'- gCCGAGG---------CG---CUCGUGgACC-UGCGGca -5'
29376 5' -62.6 NC_006151.1 + 99531 0.68 0.466778
Target:  5'- uGGCgCCGCgcccgcccacgGAGCACgUGGGCGCgGc -3'
miRNA:   3'- gCCGaGGCG-----------CUCGUGgACCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 100214 0.71 0.32942
Target:  5'- uGGCcacggCCGCGGGCGCC--GugGCCGa -3'
miRNA:   3'- gCCGa----GGCGCUCGUGGacCugCGGCa -5'
29376 5' -62.6 NC_006151.1 + 100364 0.68 0.466778
Target:  5'- uGGacgCCGUGGGCGCCUuccGCGCCGa -3'
miRNA:   3'- gCCga-GGCGCUCGUGGAcc-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 100488 0.67 0.569661
Target:  5'- gGGC-CUGCaGGCGCCcguguuccGGACGCUGUg -3'
miRNA:   3'- gCCGaGGCGcUCGUGGa-------CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 100599 0.68 0.493987
Target:  5'- gCGGC-CCGUgGAGCGcuuCCUGGcGCGCUGg -3'
miRNA:   3'- -GCCGaGGCG-CUCGU---GGACC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 100694 0.7 0.390211
Target:  5'- -cGCUCCGCGAG-ACCUGGaccgagGCGCgCGa -3'
miRNA:   3'- gcCGAGGCGCUCgUGGACC------UGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 101453 0.66 0.59787
Target:  5'- uCGGCgCCGUGGGCcugggccucuaccGCCgcgGcGACGUCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCG-------------UGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 102006 0.66 0.608629
Target:  5'- cCGcGCacCCGCGAGC-CCaUGGGCuucGCCGUc -3'
miRNA:   3'- -GC-CGa-GGCGCUCGuGG-ACCUG---CGGCA- -5'
29376 5' -62.6 NC_006151.1 + 102141 0.66 0.589087
Target:  5'- gGGCg-CGcCGGGCugCUGGAgcgcuuCGCCGa -3'
miRNA:   3'- gCCGagGC-GCUCGugGACCU------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 102250 0.66 0.598847
Target:  5'- cCGcGCUCUuCGAGCccauCCUGGGCGCg-- -3'
miRNA:   3'- -GC-CGAGGcGCUCGu---GGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 102337 0.68 0.475764
Target:  5'- aGGCg-CGCGcGCugCUGGACgugGCCGg -3'
miRNA:   3'- gCCGagGCGCuCGugGACCUG---CGGCa -5'
29376 5' -62.6 NC_006151.1 + 102419 0.73 0.263666
Target:  5'- gCGGC-CCGCGAacgaggccauGCACC-GGGCGCUGg -3'
miRNA:   3'- -GCCGaGGCGCU----------CGUGGaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 102470 0.67 0.573535
Target:  5'- gGGCUCCuacgcgcagcucucgGCGuGCuuCaUGGACGCCGc -3'
miRNA:   3'- gCCGAGG---------------CGCuCGugG-ACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103303 0.68 0.493987
Target:  5'- gCGGCUCgCGCG-GCGC---GACGCCGa -3'
miRNA:   3'- -GCCGAG-GCGCuCGUGgacCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103387 0.69 0.406513
Target:  5'- gCGGCUgCGCGcGCugCUGGGCGaCUu- -3'
miRNA:   3'- -GCCGAgGCGCuCGugGACCUGC-GGca -5'
29376 5' -62.6 NC_006151.1 + 103484 0.71 0.315357
Target:  5'- gCGGCgCUGUG-GCGCCUGGugGCgCGc -3'
miRNA:   3'- -GCCGaGGCGCuCGUGGACCugCG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.