miRNA display CGI


Results 141 - 160 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 103508 0.68 0.493987
Target:  5'- -nGCUaCCGCGAGCugCUG-ACGuCCGa -3'
miRNA:   3'- gcCGA-GGCGCUCGugGACcUGC-GGCa -5'
29376 5' -62.6 NC_006151.1 + 103536 0.66 0.585192
Target:  5'- cCGGCgcgCUgGUGGGCGCCgggcagccgcucgGGGCGCUGg -3'
miRNA:   3'- -GCCGa--GG-CGCUCGUGGa------------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103851 0.69 0.449076
Target:  5'- gCGGCUgCGCGcGCAgcCCgacgaggGGACGCUGg -3'
miRNA:   3'- -GCCGAgGCGCuCGU--GGa------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 104195 0.67 0.518139
Target:  5'- uCGGCgccaacgccgagaCCGUGAcCACggcgCUGGACGCCGUg -3'
miRNA:   3'- -GCCGa------------GGCGCUcGUG----GACCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 105705 0.68 0.484834
Target:  5'- cCGGCgcggCCGC--GCGCCUcgacGGCGCCGUg -3'
miRNA:   3'- -GCCGa---GGCGcuCGUGGAc---CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 106463 0.66 0.579357
Target:  5'- aCGGagCUGUGGGCGcCCUGGGCGCa-- -3'
miRNA:   3'- -GCCgaGGCGCUCGU-GGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 106634 0.76 0.160399
Target:  5'- gCGGUcaC-CGAGCGCCUGGACGCCGc -3'
miRNA:   3'- -GCCGagGcGCUCGUGGACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 106658 0.69 0.418176
Target:  5'- gCGGCgcacgugcgcgaggCCGCGGcgcucggcGCGCC-GGGCGCCGg -3'
miRNA:   3'- -GCCGa-------------GGCGCU--------CGUGGaCCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 106766 0.7 0.382222
Target:  5'- aGcGCgacgCgCGUGAGCGCCUGGACcugGCCGc -3'
miRNA:   3'- gC-CGa---G-GCGCUCGUGGACCUG---CGGCa -5'
29376 5' -62.6 NC_006151.1 + 106942 0.7 0.374342
Target:  5'- -aGCUCCugggGCGAGCGCCUGcuGGCGCuCGa -3'
miRNA:   3'- gcCGAGG----CGCUCGUGGAC--CUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 107090 0.71 0.343941
Target:  5'- uGGCggugUCGCGcGUGCuCUGGGCGCCGc -3'
miRNA:   3'- gCCGa---GGCGCuCGUG-GACCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 107459 0.69 0.457881
Target:  5'- -uGCUCgGCGAcgACCUGGugGCCa- -3'
miRNA:   3'- gcCGAGgCGCUcgUGGACCugCGGca -5'
29376 5' -62.6 NC_006151.1 + 112602 0.69 0.414823
Target:  5'- aGGCcgCCGCG-GCGCCgcuGGCGCUGg -3'
miRNA:   3'- gCCGa-GGCGCuCGUGGac-CUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 113206 0.67 0.560006
Target:  5'- aCGGacgCCGCcgagGAGCGCC-GGcaccGCGCCGUg -3'
miRNA:   3'- -GCCga-GGCG----CUCGUGGaCC----UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 118099 0.66 0.628234
Target:  5'- aGGCgcugcgCCGCGAcCugCUGG-CGCUGc -3'
miRNA:   3'- gCCGa-----GGCGCUcGugGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 118195 0.72 0.301752
Target:  5'- cCGGCUUCGcCGGGCACgUGGcCGUgGUg -3'
miRNA:   3'- -GCCGAGGC-GCUCGUGgACCuGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 118752 0.67 0.521897
Target:  5'- cCGGCggCCGUGccacgcgcgugcGGaACCUGGACGCgGUg -3'
miRNA:   3'- -GCCGa-GGCGC------------UCgUGGACCUGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 118926 0.68 0.466778
Target:  5'- uGGCgUCCGUcauGAGCGCCgacGcGGCGCUGUc -3'
miRNA:   3'- gCCG-AGGCG---CUCGUGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 119022 0.67 0.560006
Target:  5'- cCGuGCUCUccgagGCGGGCGCCaaGGACGgCGg -3'
miRNA:   3'- -GC-CGAGG-----CGCUCGUGGa-CCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 119382 0.67 0.550397
Target:  5'- gCGGCUucugcCCGC-AGCugCUGG-CGCgCGUg -3'
miRNA:   3'- -GCCGA-----GGCGcUCGugGACCuGCG-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.