Results 81 - 100 of 195 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 90630 | 0.71 | 0.351372 |
Target: 5'- gCGGC-CCGCGGGCGCUUGG-CGaugggCGUg -3' miRNA: 3'- -GCCGaGGCGCUCGUGGACCuGCg----GCA- -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 88396 | 0.67 | 0.531337 |
Target: 5'- gCGGCguccgcggCCGCGAG-GCCcgGGACGuCCGc -3' miRNA: 3'- -GCCGa-------GGCGCUCgUGGa-CCUGC-GGCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 87575 | 0.66 | 0.578386 |
Target: 5'- cCGGCggacgucUCCGCcGGCACCaucGACGCCa- -3' miRNA: 3'- -GCCG-------AGGCGcUCGUGGac-CUGCGGca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 87075 | 0.69 | 0.406513 |
Target: 5'- aGGCgccgccccCCGCGAGCgACCUcGcCGCCGUg -3' miRNA: 3'- gCCGa-------GGCGCUCG-UGGAcCuGCGGCA- -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 86584 | 0.68 | 0.475764 |
Target: 5'- gGGCgcgCUcCGAGCugCUGGcgcGCGCCGc -3' miRNA: 3'- gCCGa--GGcGCUCGugGACC---UGCGGCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 86421 | 0.66 | 0.598847 |
Target: 5'- uCGGCgUCCcuguccucGCG-GCGCCUGG-CGCCc- -3' miRNA: 3'- -GCCG-AGG--------CGCuCGUGGACCuGCGGca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 85762 | 0.66 | 0.608629 |
Target: 5'- gGGCUggCCGCGcuGGCG-CUGGACGCg-- -3' miRNA: 3'- gCCGA--GGCGC--UCGUgGACCUGCGgca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 85218 | 0.76 | 0.168402 |
Target: 5'- gCGGgUCCcCGAGUACCUGGACGCg-- -3' miRNA: 3'- -GCCgAGGcGCUCGUGGACCUGCGgca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 85169 | 0.69 | 0.440365 |
Target: 5'- cCGGCgCCGCGGGCGCCgccgcccCGCUGg -3' miRNA: 3'- -GCCGaGGCGCUCGUGGaccu---GCGGCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 85073 | 0.71 | 0.343941 |
Target: 5'- aGGC-CUGCGGGCGCCUGuACGUgGg -3' miRNA: 3'- gCCGaGGCGCUCGUGGACcUGCGgCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 84565 | 0.69 | 0.457881 |
Target: 5'- gGGCUUCaGCGAGgGCCUcGACGCgCGc -3' miRNA: 3'- gCCGAGG-CGCUCgUGGAcCUGCG-GCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 84304 | 0.68 | 0.466778 |
Target: 5'- gCGGCaaCGCGAGCGCgaUGGccGCGaCCGUg -3' miRNA: 3'- -GCCGagGCGCUCGUGg-ACC--UGC-GGCA- -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 83624 | 0.72 | 0.288604 |
Target: 5'- aCGGCgUCGCGAagGCgGCCUGGugcuGCGCCGUg -3' miRNA: 3'- -GCCGaGGCGCU--CG-UGGACC----UGCGGCA- -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 83436 | 0.69 | 0.457881 |
Target: 5'- gGGCUCCcCGGGCAgCgUGGcCGCCa- -3' miRNA: 3'- gCCGAGGcGCUCGU-GgACCuGCGGca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 83359 | 0.67 | 0.540839 |
Target: 5'- cCGGCgcgCgCGCGGGCGCgcaGGCGCCGc -3' miRNA: 3'- -GCCGa--G-GCGCUCGUGgacCUGCGGCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 82697 | 0.71 | 0.351372 |
Target: 5'- gCGGCccCCGCGAGgGCCaGGAgGCCc- -3' miRNA: 3'- -GCCGa-GGCGCUCgUGGaCCUgCGGca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 82612 | 0.7 | 0.374342 |
Target: 5'- gGGCccgCgCGCGGGCGCCgcggUGGGCGCgGg -3' miRNA: 3'- gCCGa--G-GCGCUCGUGG----ACCUGCGgCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 82328 | 0.68 | 0.493068 |
Target: 5'- aCGGCcaccUCCGCGGGCcacaccgccGCCgUGGuguacguGCGCCGg -3' miRNA: 3'- -GCCG----AGGCGCUCG---------UGG-ACC-------UGCGGCa -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 82155 | 0.7 | 0.398309 |
Target: 5'- gCGGCUCCagguccgaGcCGAGCGCCggGGGCGCg-- -3' miRNA: 3'- -GCCGAGG--------C-GCUCGUGGa-CCUGCGgca -5' |
|||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 82008 | 0.66 | 0.598847 |
Target: 5'- gGGCggCCGCGuGCGCCgccGACaGCUGg -3' miRNA: 3'- gCCGa-GGCGCuCGUGGac-CUG-CGGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home