miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 81750 0.73 0.234989
Target:  5'- gCGGCgcggagcuggUCCGCGGGCGCCaccgGGACGCg-- -3'
miRNA:   3'- -GCCG----------AGGCGCUCGUGGa---CCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 81696 0.66 0.579357
Target:  5'- aCGGUcgCCcgcGCGAGguCCagccgGGGCGCCGg -3'
miRNA:   3'- -GCCGa-GG---CGCUCguGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 81546 0.67 0.560006
Target:  5'- gCGcGCUCCGCGGuGCACaUGGcCGUgGUg -3'
miRNA:   3'- -GC-CGAGGCGCU-CGUGgACCuGCGgCA- -5'
29376 5' -62.6 NC_006151.1 + 78704 0.66 0.628234
Target:  5'- gGGCcucgucgCCGCGAcgGCGCCcgugGGGCGCgCGc -3'
miRNA:   3'- gCCGa------GGCGCU--CGUGGa---CCUGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 78406 0.8 0.092656
Target:  5'- gCGGCUcucgggCCGCGAGCGCCgUGGcccACGCCGUc -3'
miRNA:   3'- -GCCGA------GGCGCUCGUGG-ACC---UGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78271 0.66 0.589087
Target:  5'- uGGC-CCGCuGGCACCUGccgagcugcuACGCCGc -3'
miRNA:   3'- gCCGaGGCGcUCGUGGACc---------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 78131 0.8 0.088062
Target:  5'- gCGGCgggCCGCGGGCGCCUcGGAcgacgccucggcCGCCGUg -3'
miRNA:   3'- -GCCGa--GGCGCUCGUGGA-CCU------------GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78042 0.67 0.560006
Target:  5'- cCGGCgaCGCGGcGCAUCUGGGCGaCGc -3'
miRNA:   3'- -GCCGagGCGCU-CGUGGACCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 77012 0.72 0.308497
Target:  5'- uGGC-CCGCGAGC-CgUGGAgCGCCa- -3'
miRNA:   3'- gCCGaGGCGCUCGuGgACCU-GCGGca -5'
29376 5' -62.6 NC_006151.1 + 76174 0.66 0.628234
Target:  5'- -uGCg-CGCGAGCugCUGGAUGgCGc -3'
miRNA:   3'- gcCGagGCGCUCGugGACCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 76043 0.67 0.568694
Target:  5'- gCGG-UCCGCGAGCcggcCCUcguagagcgugaaGGGCGCCa- -3'
miRNA:   3'- -GCCgAGGCGCUCGu---GGA-------------CCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 75251 0.73 0.234989
Target:  5'- aGGCgcacugcaccUCCGCGGGCuCCUGGcgcaGCGCCGc -3'
miRNA:   3'- gCCG----------AGGCGCUCGuGGACC----UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73591 0.66 0.618426
Target:  5'- gGGCgaagCCGgGGuGCAgCUGG-CGCCGc -3'
miRNA:   3'- gCCGa---GGCgCU-CGUgGACCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73451 0.66 0.589087
Target:  5'- gGGCUgCGUGAGCugCaGGugcagccCGCCGc -3'
miRNA:   3'- gCCGAgGCGCUCGugGaCCu------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73218 0.76 0.160399
Target:  5'- aGGC-CCGCGGGCACCUgGGGCagcaucugGCCGa -3'
miRNA:   3'- gCCGaGGCGCUCGUGGA-CCUG--------CGGCa -5'
29376 5' -62.6 NC_006151.1 + 71965 0.66 0.579357
Target:  5'- uCGGCguugUCGCGgugcggcgggGGCAgCUGGuaGCGCCGg -3'
miRNA:   3'- -GCCGa---GGCGC----------UCGUgGACC--UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 71582 0.69 0.449076
Target:  5'- gGGCauccUCCGCGGGCGCC---GCGUCGUc -3'
miRNA:   3'- gCCG----AGGCGCUCGUGGaccUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 71090 0.8 0.083686
Target:  5'- aCGGCgCCGCGGGCGC--GGGCGCCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCGUGgaCCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 69635 0.66 0.598847
Target:  5'- uCGGCgucCCGCGcgugcGGCGCCgccgGGuCGUCGa -3'
miRNA:   3'- -GCCGa--GGCGC-----UCGUGGa---CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 69458 0.67 0.569661
Target:  5'- uCGcGCgCCGCGGGCGCC-GGcaccguCGCCGc -3'
miRNA:   3'- -GC-CGaGGCGCUCGUGGaCCu-----GCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.