Results 141 - 160 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 55012 | 0.68 | 0.512522 |
Target: 5'- gGGCgcaagcCCGCcgagGGGCACCcGGccgGCGCCGUg -3' miRNA: 3'- gCCGa-----GGCG----CUCGUGGaCC---UGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 54643 | 0.7 | 0.382222 |
Target: 5'- gCGGCggCGCGAGCGCUgcgUGGACGagcaCGa -3' miRNA: 3'- -GCCGagGCGCUCGUGG---ACCUGCg---GCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 53976 | 0.66 | 0.598847 |
Target: 5'- gCGGCgccUCCGCGGGCGucgcggcgagcuCCcGGACGCg-- -3' miRNA: 3'- -GCCG---AGGCGCUCGU------------GGaCCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 53571 | 0.68 | 0.503217 |
Target: 5'- uGGCUccCCGCGAGCAC----GCGCCGc -3' miRNA: 3'- gCCGA--GGCGCUCGUGgaccUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 52794 | 0.73 | 0.257712 |
Target: 5'- gCGGCUCUGCGAGUAgUUGGugauGCgGCCGg -3' miRNA: 3'- -GCCGAGGCGCUCGUgGACC----UG-CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 52481 | 0.68 | 0.512522 |
Target: 5'- aGGCcgCCGUGAcgGCCUcGGGCGCCa- -3' miRNA: 3'- gCCGa-GGCGCUcgUGGA-CCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 52384 | 0.7 | 0.382222 |
Target: 5'- gGGC-CCGCGGGgGCggcGGGCGCCGc -3' miRNA: 3'- gCCGaGGCGCUCgUGga-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 50254 | 0.72 | 0.301752 |
Target: 5'- gCGGCgCCaUGAGCACCUucGGACGCgCGUc -3' miRNA: 3'- -GCCGaGGcGCUCGUGGA--CCUGCG-GCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 50021 | 0.7 | 0.382222 |
Target: 5'- gCGGC-CCGCGcGGCGCCcccGGGCGCgGc -3' miRNA: 3'- -GCCGaGGCGC-UCGUGGa--CCUGCGgCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 49841 | 0.66 | 0.579357 |
Target: 5'- aCGGCggCgGCGGGCccGCgCUGGGCGCagcaCGUg -3' miRNA: 3'- -GCCGa-GgCGCUCG--UG-GACCUGCG----GCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 44166 | 0.67 | 0.521897 |
Target: 5'- aCGuGCccCUGgGAGCACCgcgGGuCGCCGUc -3' miRNA: 3'- -GC-CGa-GGCgCUCGUGGa--CCuGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 40068 | 0.82 | 0.059921 |
Target: 5'- cCGGC-CCGCGGGgGCCUcGGGCGCCGg -3' miRNA: 3'- -GCCGaGGCGCUCgUGGA-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 40030 | 0.68 | 0.512522 |
Target: 5'- -aGCgUCCGCGc-CGCCgccggGGGCGCCGUg -3' miRNA: 3'- gcCG-AGGCGCucGUGGa----CCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 39966 | 0.66 | 0.608629 |
Target: 5'- gGGCgccgucgccgCCGCGGGCGCCc---CGCCGg -3' miRNA: 3'- gCCGa---------GGCGCUCGUGGaccuGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 39911 | 0.72 | 0.308497 |
Target: 5'- -uGCgCCGCGGGCugCUGGAgcccgaCGCCGa -3' miRNA: 3'- gcCGaGGCGCUCGugGACCU------GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 39864 | 0.66 | 0.598847 |
Target: 5'- cCGaGCUCCGCG-GCcCCgaGGGCcuGCCGg -3' miRNA: 3'- -GC-CGAGGCGCuCGuGGa-CCUG--CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 39340 | 0.67 | 0.521897 |
Target: 5'- gCGGCUCgGCGcGGCGC---GGCGCCGg -3' miRNA: 3'- -GCCGAGgCGC-UCGUGgacCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 38222 | 0.7 | 0.374342 |
Target: 5'- cCGcGC-CCGCGAGgcCGCCUGGAccuaCGCCGc -3' miRNA: 3'- -GC-CGaGGCGCUC--GUGGACCU----GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 37954 | 0.66 | 0.628234 |
Target: 5'- gCGuGCcCCGCGAGCuggcGGACGCCu- -3' miRNA: 3'- -GC-CGaGGCGCUCGuggaCCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 33206 | 0.67 | 0.540839 |
Target: 5'- cCGGCgcccCCG-GAGCACgCgGGGCGCCc- -3' miRNA: 3'- -GCCGa---GGCgCUCGUG-GaCCUGCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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