Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 102470 | 0.67 | 0.573535 |
Target: 5'- gGGCUCCuacgcgcagcucucgGCGuGCuuCaUGGACGCCGc -3' miRNA: 3'- gCCGAGG---------------CGCuCGugG-ACCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 100488 | 0.67 | 0.569661 |
Target: 5'- gGGC-CUGCaGGCGCCcguguuccGGACGCUGUg -3' miRNA: 3'- gCCGaGGCGcUCGUGGa-------CCUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 69458 | 0.67 | 0.569661 |
Target: 5'- uCGcGCgCCGCGGGCGCC-GGcaccguCGCCGc -3' miRNA: 3'- -GC-CGaGGCGCUCGUGGaCCu-----GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 65191 | 0.67 | 0.569661 |
Target: 5'- gCGGgUCCGCGAGCGCgCUGcGCGa-GUu -3' miRNA: 3'- -GCCgAGGCGCUCGUG-GACcUGCggCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 137703 | 0.67 | 0.569661 |
Target: 5'- gGGCuUCCGCGuguGCAcgcCCUGccguCGCCGUa -3' miRNA: 3'- gCCG-AGGCGCu--CGU---GGACcu--GCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 76043 | 0.67 | 0.568694 |
Target: 5'- gCGG-UCCGCGAGCcggcCCUcguagagcgugaaGGGCGCCa- -3' miRNA: 3'- -GCCgAGGCGCUCGu---GGA-------------CCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 78042 | 0.67 | 0.560006 |
Target: 5'- cCGGCgaCGCGGcGCAUCUGGGCGaCGc -3' miRNA: 3'- -GCCGagGCGCU-CGUGGACCUGCgGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 49841 | 0.66 | 0.579357 |
Target: 5'- aCGGCggCgGCGGGCccGCgCUGGGCGCagcaCGUg -3' miRNA: 3'- -GCCGa-GgCGCUCG--UG-GACCUGCG----GCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 71965 | 0.66 | 0.579357 |
Target: 5'- uCGGCguugUCGCGgugcggcgggGGCAgCUGGuaGCGCCGg -3' miRNA: 3'- -GCCGa---GGCGC----------UCGUgGACC--UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 81696 | 0.66 | 0.579357 |
Target: 5'- aCGGUcgCCcgcGCGAGguCCagccgGGGCGCCGg -3' miRNA: 3'- -GCCGa-GG---CGCUCguGGa----CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 101453 | 0.66 | 0.59787 |
Target: 5'- uCGGCgCCGUGGGCcugggccucuaccGCCgcgGcGACGUCGUg -3' miRNA: 3'- -GCCGaGGCGCUCG-------------UGGa--C-CUGCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 78271 | 0.66 | 0.589087 |
Target: 5'- uGGC-CCGCuGGCACCUGccgagcugcuACGCCGc -3' miRNA: 3'- gCCGaGGCGcUCGUGGACc---------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 73451 | 0.66 | 0.589087 |
Target: 5'- gGGCUgCGUGAGCugCaGGugcagccCGCCGc -3' miRNA: 3'- gCCGAgGCGCUCGugGaCCu------GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 20979 | 0.66 | 0.589087 |
Target: 5'- gGGCgcgUCGcCGGGCACgaGGACGgCGc -3' miRNA: 3'- gCCGa--GGC-GCUCGUGgaCCUGCgGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 102141 | 0.66 | 0.589087 |
Target: 5'- gGGCg-CGcCGGGCugCUGGAgcgcuuCGCCGa -3' miRNA: 3'- gCCGagGC-GCUCGugGACCU------GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 103536 | 0.66 | 0.585192 |
Target: 5'- cCGGCgcgCUgGUGGGCGCCgggcagccgcucgGGGCGCUGg -3' miRNA: 3'- -GCCGa--GG-CGCUCGUGGa------------CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 137920 | 0.66 | 0.579357 |
Target: 5'- gCGGCUgCCaCGGGCGCCUgcuccccuuuggGGACGCg-- -3' miRNA: 3'- -GCCGA-GGcGCUCGUGGA------------CCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 106463 | 0.66 | 0.579357 |
Target: 5'- aCGGagCUGUGGGCGcCCUGGGCGCa-- -3' miRNA: 3'- -GCCgaGGCGCUCGU-GGACCUGCGgca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3477 | 0.66 | 0.579357 |
Target: 5'- gGGC-CCgaGCGGGCGCC-GGA-GCCGg -3' miRNA: 3'- gCCGaGG--CGCUCGUGGaCCUgCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 123004 | 0.66 | 0.579357 |
Target: 5'- gGGC-CCgGCGcGCccccGCCggcGGACGCCGUg -3' miRNA: 3'- gCCGaGG-CGCuCG----UGGa--CCUGCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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