Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29376 | 5' | -62.6 | NC_006151.1 | + | 673 | 0.73 | 0.234989 |
Target: 5'- gGGCUCCGCGGaucGCAUC-GGcGCGCCGa -3' miRNA: 3'- gCCGAGGCGCU---CGUGGaCC-UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 2105 | 0.67 | 0.560006 |
Target: 5'- cCGaGCgggCCGCGGGgccggccgucgcCGCCgcGGACGCCGa -3' miRNA: 3'- -GC-CGa--GGCGCUC------------GUGGa-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3270 | 0.68 | 0.484834 |
Target: 5'- gCGGCgcgCgGCGAuguGCGCCaGGGCgGCCGg -3' miRNA: 3'- -GCCGa--GgCGCU---CGUGGaCCUG-CGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3300 | 0.66 | 0.598847 |
Target: 5'- nGGgUCgaagGUGAGCGCC-GGGCGCCa- -3' miRNA: 3'- gCCgAGg---CGCUCGUGGaCCUGCGGca -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3477 | 0.66 | 0.579357 |
Target: 5'- gGGC-CCgaGCGGGCGCC-GGA-GCCGg -3' miRNA: 3'- gCCGaGG--CGCUCGUGGaCCUgCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 3951 | 0.75 | 0.19459 |
Target: 5'- gGGCUCCGCGGGC-CCgGGcCGCgCGg -3' miRNA: 3'- gCCGAGGCGCUCGuGGaCCuGCG-GCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5023 | 0.69 | 0.423236 |
Target: 5'- gGGCUCCG-GGGCcgggGCCggGGAgGCCGc -3' miRNA: 3'- gCCGAGGCgCUCG----UGGa-CCUgCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5073 | 0.68 | 0.466778 |
Target: 5'- aGGCcgagggCCGCGGG-GCCgcggcGGGCGCCGg -3' miRNA: 3'- gCCGa-----GGCGCUCgUGGa----CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5118 | 0.68 | 0.484834 |
Target: 5'- gCGGCccggCGCGGGCGagugGGGCGCCGg -3' miRNA: 3'- -GCCGag--GCGCUCGUgga-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5615 | 0.67 | 0.521897 |
Target: 5'- cCGGCggaGgGGGCGCCgccgccgccGGGCGCCGa -3' miRNA: 3'- -GCCGaggCgCUCGUGGa--------CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5697 | 0.66 | 0.598847 |
Target: 5'- cCGGCgCUGCGGccaccGCugCUGGcugugcuggugGCGCCGg -3' miRNA: 3'- -GCCGaGGCGCU-----CGugGACC-----------UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 5850 | 0.68 | 0.466778 |
Target: 5'- aGGCUgCGgagggggaCGAGCGCCcgGGGcCGCCGg -3' miRNA: 3'- gCCGAgGC--------GCUCGUGGa-CCU-GCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 6234 | 0.73 | 0.251868 |
Target: 5'- gCGGCgCCGgGAGC-CCUGGcugcCGCCGUc -3' miRNA: 3'- -GCCGaGGCgCUCGuGGACCu---GCGGCA- -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 9046 | 0.73 | 0.257712 |
Target: 5'- gGGCgccCCGCGuGCuCCggGGGCGCCGg -3' miRNA: 3'- gCCGa--GGCGCuCGuGGa-CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 11039 | 0.75 | 0.199286 |
Target: 5'- cCGGCcggCCGgGGGCccgGCCUGGACGCgGg -3' miRNA: 3'- -GCCGa--GGCgCUCG---UGGACCUGCGgCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 13688 | 0.66 | 0.628234 |
Target: 5'- cCGGCcaaUGCGGGCuCCcgGGACGCgGg -3' miRNA: 3'- -GCCGag-GCGCUCGuGGa-CCUGCGgCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 17086 | 0.68 | 0.466778 |
Target: 5'- cCGGgUCagGCGcGCGCCcgucgGGGCGCCGg -3' miRNA: 3'- -GCCgAGg-CGCuCGUGGa----CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 17296 | 0.72 | 0.2822 |
Target: 5'- gGGCUCCcCGGGCuucgagccguccGCCgggGGGCGCCGc -3' miRNA: 3'- gCCGAGGcGCUCG------------UGGa--CCUGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 17708 | 0.7 | 0.374342 |
Target: 5'- aGGCUgCUGUGuGCGCCcgGGuGCGCCGg -3' miRNA: 3'- gCCGA-GGCGCuCGUGGa-CC-UGCGGCa -5' |
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29376 | 5' | -62.6 | NC_006151.1 | + | 18684 | 0.68 | 0.512522 |
Target: 5'- gGGUUCCaCGGGCGCgCgGGcgGCGCCGg -3' miRNA: 3'- gCCGAGGcGCUCGUG-GaCC--UGCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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