miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 673 0.73 0.234989
Target:  5'- gGGCUCCGCGGaucGCAUC-GGcGCGCCGa -3'
miRNA:   3'- gCCGAGGCGCU---CGUGGaCC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 2105 0.67 0.560006
Target:  5'- cCGaGCgggCCGCGGGgccggccgucgcCGCCgcGGACGCCGa -3'
miRNA:   3'- -GC-CGa--GGCGCUC------------GUGGa-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 3270 0.68 0.484834
Target:  5'- gCGGCgcgCgGCGAuguGCGCCaGGGCgGCCGg -3'
miRNA:   3'- -GCCGa--GgCGCU---CGUGGaCCUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 3300 0.66 0.598847
Target:  5'- nGGgUCgaagGUGAGCGCC-GGGCGCCa- -3'
miRNA:   3'- gCCgAGg---CGCUCGUGGaCCUGCGGca -5'
29376 5' -62.6 NC_006151.1 + 3477 0.66 0.579357
Target:  5'- gGGC-CCgaGCGGGCGCC-GGA-GCCGg -3'
miRNA:   3'- gCCGaGG--CGCUCGUGGaCCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 3951 0.75 0.19459
Target:  5'- gGGCUCCGCGGGC-CCgGGcCGCgCGg -3'
miRNA:   3'- gCCGAGGCGCUCGuGGaCCuGCG-GCa -5'
29376 5' -62.6 NC_006151.1 + 5023 0.69 0.423236
Target:  5'- gGGCUCCG-GGGCcgggGCCggGGAgGCCGc -3'
miRNA:   3'- gCCGAGGCgCUCG----UGGa-CCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5073 0.68 0.466778
Target:  5'- aGGCcgagggCCGCGGG-GCCgcggcGGGCGCCGg -3'
miRNA:   3'- gCCGa-----GGCGCUCgUGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5118 0.68 0.484834
Target:  5'- gCGGCccggCGCGGGCGagugGGGCGCCGg -3'
miRNA:   3'- -GCCGag--GCGCUCGUgga-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5615 0.67 0.521897
Target:  5'- cCGGCggaGgGGGCGCCgccgccgccGGGCGCCGa -3'
miRNA:   3'- -GCCGaggCgCUCGUGGa--------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5697 0.66 0.598847
Target:  5'- cCGGCgCUGCGGccaccGCugCUGGcugugcuggugGCGCCGg -3'
miRNA:   3'- -GCCGaGGCGCU-----CGugGACC-----------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 5850 0.68 0.466778
Target:  5'- aGGCUgCGgagggggaCGAGCGCCcgGGGcCGCCGg -3'
miRNA:   3'- gCCGAgGC--------GCUCGUGGa-CCU-GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 6234 0.73 0.251868
Target:  5'- gCGGCgCCGgGAGC-CCUGGcugcCGCCGUc -3'
miRNA:   3'- -GCCGaGGCgCUCGuGGACCu---GCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 9046 0.73 0.257712
Target:  5'- gGGCgccCCGCGuGCuCCggGGGCGCCGg -3'
miRNA:   3'- gCCGa--GGCGCuCGuGGa-CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 11039 0.75 0.199286
Target:  5'- cCGGCcggCCGgGGGCccgGCCUGGACGCgGg -3'
miRNA:   3'- -GCCGa--GGCgCUCG---UGGACCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 13688 0.66 0.628234
Target:  5'- cCGGCcaaUGCGGGCuCCcgGGACGCgGg -3'
miRNA:   3'- -GCCGag-GCGCUCGuGGa-CCUGCGgCa -5'
29376 5' -62.6 NC_006151.1 + 17086 0.68 0.466778
Target:  5'- cCGGgUCagGCGcGCGCCcgucgGGGCGCCGg -3'
miRNA:   3'- -GCCgAGg-CGCuCGUGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 17296 0.72 0.2822
Target:  5'- gGGCUCCcCGGGCuucgagccguccGCCgggGGGCGCCGc -3'
miRNA:   3'- gCCGAGGcGCUCG------------UGGa--CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 17708 0.7 0.374342
Target:  5'- aGGCUgCUGUGuGCGCCcgGGuGCGCCGg -3'
miRNA:   3'- gCCGA-GGCGCuCGUGGa-CC-UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 18684 0.68 0.512522
Target:  5'- gGGUUCCaCGGGCGCgCgGGcgGCGCCGg -3'
miRNA:   3'- gCCGAGGcGCUCGUG-GaCC--UGCGGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.