miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29376 5' -62.6 NC_006151.1 + 86421 0.66 0.598847
Target:  5'- uCGGCgUCCcuguccucGCG-GCGCCUGG-CGCCc- -3'
miRNA:   3'- -GCCG-AGG--------CGCuCGUGGACCuGCGGca -5'
29376 5' -62.6 NC_006151.1 + 102250 0.66 0.598847
Target:  5'- cCGcGCUCUuCGAGCccauCCUGGGCGCg-- -3'
miRNA:   3'- -GC-CGAGGcGCUCGu---GGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 5697 0.66 0.598847
Target:  5'- cCGGCgCUGCGGccaccGCugCUGGcugugcuggugGCGCCGg -3'
miRNA:   3'- -GCCGaGGCGCU-----CGugGACC-----------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 53976 0.66 0.598847
Target:  5'- gCGGCgccUCCGCGGGCGucgcggcgagcuCCcGGACGCg-- -3'
miRNA:   3'- -GCCG---AGGCGCUCGU------------GGaCCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 82008 0.66 0.598847
Target:  5'- gGGCggCCGCGuGCGCCgccGACaGCUGg -3'
miRNA:   3'- gCCGa-GGCGCuCGUGGac-CUG-CGGCa -5'
29376 5' -62.6 NC_006151.1 + 69635 0.66 0.598847
Target:  5'- uCGGCgucCCGCGcgugcGGCGCCgccgGGuCGUCGa -3'
miRNA:   3'- -GCCGa--GGCGC-----UCGUGGa---CCuGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 101453 0.66 0.59787
Target:  5'- uCGGCgCCGUGGGCcugggccucuaccGCCgcgGcGACGUCGUg -3'
miRNA:   3'- -GCCGaGGCGCUCG-------------UGGa--C-CUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 78271 0.66 0.589087
Target:  5'- uGGC-CCGCuGGCACCUGccgagcugcuACGCCGc -3'
miRNA:   3'- gCCGaGGCGcUCGUGGACc---------UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 73451 0.66 0.589087
Target:  5'- gGGCUgCGUGAGCugCaGGugcagccCGCCGc -3'
miRNA:   3'- gCCGAgGCGCUCGugGaCCu------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 20979 0.66 0.589087
Target:  5'- gGGCgcgUCGcCGGGCACgaGGACGgCGc -3'
miRNA:   3'- gCCGa--GGC-GCUCGUGgaCCUGCgGCa -5'
29376 5' -62.6 NC_006151.1 + 102141 0.66 0.589087
Target:  5'- gGGCg-CGcCGGGCugCUGGAgcgcuuCGCCGa -3'
miRNA:   3'- gCCGagGC-GCUCGugGACCU------GCGGCa -5'
29376 5' -62.6 NC_006151.1 + 103536 0.66 0.585192
Target:  5'- cCGGCgcgCUgGUGGGCGCCgggcagccgcucgGGGCGCUGg -3'
miRNA:   3'- -GCCGa--GG-CGCUCGUGGa------------CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 106463 0.66 0.579357
Target:  5'- aCGGagCUGUGGGCGcCCUGGGCGCa-- -3'
miRNA:   3'- -GCCgaGGCGCUCGU-GGACCUGCGgca -5'
29376 5' -62.6 NC_006151.1 + 3477 0.66 0.579357
Target:  5'- gGGC-CCgaGCGGGCGCC-GGA-GCCGg -3'
miRNA:   3'- gCCGaGG--CGCUCGUGGaCCUgCGGCa -5'
29376 5' -62.6 NC_006151.1 + 123004 0.66 0.579357
Target:  5'- gGGC-CCgGCGcGCccccGCCggcGGACGCCGUg -3'
miRNA:   3'- gCCGaGG-CGCuCG----UGGa--CCUGCGGCA- -5'
29376 5' -62.6 NC_006151.1 + 81696 0.66 0.579357
Target:  5'- aCGGUcgCCcgcGCGAGguCCagccgGGGCGCCGg -3'
miRNA:   3'- -GCCGa-GG---CGCUCguGGa----CCUGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 71965 0.66 0.579357
Target:  5'- uCGGCguugUCGCGgugcggcgggGGCAgCUGGuaGCGCCGg -3'
miRNA:   3'- -GCCGa---GGCGC----------UCGUgGACC--UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 49841 0.66 0.579357
Target:  5'- aCGGCggCgGCGGGCccGCgCUGGGCGCagcaCGUg -3'
miRNA:   3'- -GCCGa-GgCGCUCG--UG-GACCUGCG----GCA- -5'
29376 5' -62.6 NC_006151.1 + 31341 0.66 0.579357
Target:  5'- uCGGCgCCGUGGGCccgACCccGGuccGCGCCGg -3'
miRNA:   3'- -GCCGaGGCGCUCG---UGGa-CC---UGCGGCa -5'
29376 5' -62.6 NC_006151.1 + 24494 0.66 0.579357
Target:  5'- uGGUcCCgGCGAGC-CCguaaaaguUGGGCGCCGc -3'
miRNA:   3'- gCCGaGG-CGCUCGuGG--------ACCUGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.