miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 136466 1.11 0.000507
Target:  5'- gUGCGCGCCGACCGCGCCGAGAUGGGCg -3'
miRNA:   3'- -ACGCGCGGCUGGCGCGGCUCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 89719 0.86 0.034105
Target:  5'- gGCgGCGCCGGCCGCgGCCGcgguGGUGGGCg -3'
miRNA:   3'- aCG-CGCGGCUGGCG-CGGCu---CUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 131864 0.85 0.039883
Target:  5'- cGCGCGCCGGCgGCGUCGGGucgcaGGGCa -3'
miRNA:   3'- aCGCGCGGCUGgCGCGGCUCua---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 91291 0.84 0.04542
Target:  5'- cGCGCGCCGcgucagcaGCCGCGCCGGGAaGGcGCc -3'
miRNA:   3'- aCGCGCGGC--------UGGCGCGGCUCUaCC-CG- -5'
29377 3' -62.8 NC_006151.1 + 99686 0.82 0.057336
Target:  5'- cUGCGCGCCGACgGCGCCGGGGagacgcccaUGGagGCg -3'
miRNA:   3'- -ACGCGCGGCUGgCGCGGCUCU---------ACC--CG- -5'
29377 3' -62.8 NC_006151.1 + 137672 0.81 0.070251
Target:  5'- aGCGCccGCCGugcggcuGCCGCGCCaAGAUGGGCu -3'
miRNA:   3'- aCGCG--CGGC-------UGGCGCGGcUCUACCCG- -5'
29377 3' -62.8 NC_006151.1 + 54398 0.8 0.082094
Target:  5'- cGCGCGCgCGGCCucgGCGCCGAGGcgcUGGcGCg -3'
miRNA:   3'- aCGCGCG-GCUGG---CGCGGCUCU---ACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 2959 0.8 0.090412
Target:  5'- gGCGCcggcgaaGCCGAggucCCGCGCCGAGAgcagagcacccccUGGGCg -3'
miRNA:   3'- aCGCG-------CGGCU----GGCGCGGCUCU-------------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 66550 0.79 0.103098
Target:  5'- gGCGCGCgCGGCCGCGCCGccGUGGa- -3'
miRNA:   3'- aCGCGCG-GCUGGCGCGGCucUACCcg -5'
29377 3' -62.8 NC_006151.1 + 67748 0.78 0.10841
Target:  5'- gGCGCGgCGGCCcCGUCGGGGUGcGGCg -3'
miRNA:   3'- aCGCGCgGCUGGcGCGGCUCUAC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 64471 0.78 0.111161
Target:  5'- cGCGCGCCG-CCGCGgCGGGGacgcccgcGGGCg -3'
miRNA:   3'- aCGCGCGGCuGGCGCgGCUCUa-------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 55453 0.78 0.111161
Target:  5'- gGCGcCGCCGGCCcCGCCGGG--GGGCg -3'
miRNA:   3'- aCGC-GCGGCUGGcGCGGCUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 98382 0.78 0.113978
Target:  5'- cGCGCGCUGcgccuggccuGCCGCGCCuacgucGAGAcGGGCa -3'
miRNA:   3'- aCGCGCGGC----------UGGCGCGG------CUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 122664 0.78 0.116861
Target:  5'- gGCGCGagCG-CCGCGCCGAGGUGcGCg -3'
miRNA:   3'- aCGCGCg-GCuGGCGCGGCUCUACcCG- -5'
29377 3' -62.8 NC_006151.1 + 64515 0.78 0.118033
Target:  5'- cGCGCGCCGccaaaggccgccgcgGCCGCGUCGGGGgcGGCg -3'
miRNA:   3'- aCGCGCGGC---------------UGGCGCGGCUCUacCCG- -5'
29377 3' -62.8 NC_006151.1 + 100414 0.78 0.122832
Target:  5'- aUGCGCGCCGACgcgggggcgcugCGCGgCGuGAUGGcGCa -3'
miRNA:   3'- -ACGCGCGGCUG------------GCGCgGCuCUACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 105288 0.78 0.125923
Target:  5'- cGCGCGCgCGGCCGCGCCGgcgccuccgaGGAcGaGGCc -3'
miRNA:   3'- aCGCGCG-GCUGGCGCGGC----------UCUaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 34015 0.77 0.129086
Target:  5'- gGCGCGCCGGCCcggcccucccCGCCGGGAaGGGg -3'
miRNA:   3'- aCGCGCGGCUGGc---------GCGGCUCUaCCCg -5'
29377 3' -62.8 NC_006151.1 + 124078 0.77 0.129086
Target:  5'- cGUGCGCgCGGCCGCGaCCGAGcgGGa- -3'
miRNA:   3'- aCGCGCG-GCUGGCGC-GGCUCuaCCcg -5'
29377 3' -62.8 NC_006151.1 + 92168 0.77 0.135632
Target:  5'- cGCG-GCCGugCGCGCCGAcggcGAcgGGGCc -3'
miRNA:   3'- aCGCgCGGCugGCGCGGCU----CUa-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.