miRNA display CGI


Results 1 - 20 of 472 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 641 0.72 0.295574
Target:  5'- cGUGaCGCCGGCuuccggggCGCgGCCGGGgcGGGCu -3'
miRNA:   3'- aCGC-GCGGCUG--------GCG-CGGCUCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 692 0.72 0.280786
Target:  5'- gGCGCGCCGAgccugccccuuccgUCGCaCCGGGGguccgcGGGCg -3'
miRNA:   3'- aCGCGCGGCU--------------GGCGcGGCUCUa-----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 1829 0.69 0.406665
Target:  5'- gGCaaGCGCCG-CCGgGCCGAGGggaccGaGGCc -3'
miRNA:   3'- aCG--CGCGGCuGGCgCGGCUCUa----C-CCG- -5'
29377 3' -62.8 NC_006151.1 + 1995 0.74 0.230147
Target:  5'- aGCagaGuCCGGCCGgGCCGAGG-GGGCg -3'
miRNA:   3'- aCGcg-C-GGCUGGCgCGGCUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 2296 0.7 0.35921
Target:  5'- cGCgGCGgCGACgGCGCCcGGGGUcagcaccagcgGGGCg -3'
miRNA:   3'- aCG-CGCgGCUGgCGCGG-CUCUA-----------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 2604 0.69 0.423335
Target:  5'- cGCGCGgCGGCaGCGggaCCGGGGUccgGGGCc -3'
miRNA:   3'- aCGCGCgGCUGgCGC---GGCUCUA---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 2915 0.74 0.214559
Target:  5'- aGCcgGCGCCGcGCCGCGCCGAGccGcGaGCa -3'
miRNA:   3'- aCG--CGCGGC-UGGCGCGGCUCuaC-C-CG- -5'
29377 3' -62.8 NC_006151.1 + 2959 0.8 0.090412
Target:  5'- gGCGCcggcgaaGCCGAggucCCGCGCCGAGAgcagagcacccccUGGGCg -3'
miRNA:   3'- aCGCG-------CGGCU----GGCGCGGCUCU-------------ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 3097 0.69 0.445605
Target:  5'- aGCaGCGCCGagaggccGCCGCggcgcgggucccagGCCGGGcgcgGGGCg -3'
miRNA:   3'- aCG-CGCGGC-------UGGCG--------------CGGCUCua--CCCG- -5'
29377 3' -62.8 NC_006151.1 + 3283 0.69 0.422492
Target:  5'- aUGUGCGCCagggcGGCCGgGUCGaAGGUgagcgccGGGCg -3'
miRNA:   3'- -ACGCGCGG-----CUGGCgCGGC-UCUA-------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 3725 0.66 0.608082
Target:  5'- cGgGCGCUGGguCCGgGCCGgcGGcgGGGg -3'
miRNA:   3'- aCgCGCGGCU--GGCgCGGC--UCuaCCCg -5'
29377 3' -62.8 NC_006151.1 + 3873 0.67 0.540532
Target:  5'- gGCGCccGCCGccGCCgGCGCCGGcGcUGGGa -3'
miRNA:   3'- aCGCG--CGGC--UGG-CGCGGCU-CuACCCg -5'
29377 3' -62.8 NC_006151.1 + 3984 0.71 0.322722
Target:  5'- gGCGaGCCGGCCGCggccacguugGCCGGGGcgaagaGGGCc -3'
miRNA:   3'- aCGCgCGGCUGGCG----------CGGCUCUa-----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 4702 0.66 0.598334
Target:  5'- cGC-CGgCGGCCcCGCUGuAGAUGaGGCg -3'
miRNA:   3'- aCGcGCgGCUGGcGCGGC-UCUAC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 4786 0.67 0.540532
Target:  5'- cGgGC-CCGGCCGCGgCGcGGUagcGGGCc -3'
miRNA:   3'- aCgCGcGGCUGGCGCgGCuCUA---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 4995 0.67 0.531064
Target:  5'- aGCgGCGCUucCUGCGCgGGGGccGGGCg -3'
miRNA:   3'- aCG-CGCGGcuGGCGCGgCUCUa-CCCG- -5'
29377 3' -62.8 NC_006151.1 + 5238 0.71 0.336978
Target:  5'- aGCGcCGCgCGGCgGCGgCGGGGgcccgggGGGCg -3'
miRNA:   3'- aCGC-GCG-GCUGgCGCgGCUCUa------CCCG- -5'
29377 3' -62.8 NC_006151.1 + 5350 0.68 0.484725
Target:  5'- gGCGCccucuCCGGCgCgGCGCCG-GcgGGGCu -3'
miRNA:   3'- aCGCGc----GGCUG-G-CGCGGCuCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 5626 0.74 0.224847
Target:  5'- gGCGcCGCCGccGCCggGCGCCGAGAccGGCc -3'
miRNA:   3'- aCGC-GCGGC--UGG--CGCGGCUCUacCCG- -5'
29377 3' -62.8 NC_006151.1 + 5680 0.67 0.531064
Target:  5'- aGCGgGCCcccGCCGUGCCGGcGcUGcGGCc -3'
miRNA:   3'- aCGCgCGGc--UGGCGCGGCU-CuAC-CCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.