Results 1 - 20 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 3' | -62.8 | NC_006151.1 | + | 641 | 0.72 | 0.295574 |
Target: 5'- cGUGaCGCCGGCuuccggggCGCgGCCGGGgcGGGCu -3' miRNA: 3'- aCGC-GCGGCUG--------GCG-CGGCUCuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 692 | 0.72 | 0.280786 |
Target: 5'- gGCGCGCCGAgccugccccuuccgUCGCaCCGGGGguccgcGGGCg -3' miRNA: 3'- aCGCGCGGCU--------------GGCGcGGCUCUa-----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 1829 | 0.69 | 0.406665 |
Target: 5'- gGCaaGCGCCG-CCGgGCCGAGGggaccGaGGCc -3' miRNA: 3'- aCG--CGCGGCuGGCgCGGCUCUa----C-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 1995 | 0.74 | 0.230147 |
Target: 5'- aGCagaGuCCGGCCGgGCCGAGG-GGGCg -3' miRNA: 3'- aCGcg-C-GGCUGGCgCGGCUCUaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 2296 | 0.7 | 0.35921 |
Target: 5'- cGCgGCGgCGACgGCGCCcGGGGUcagcaccagcgGGGCg -3' miRNA: 3'- aCG-CGCgGCUGgCGCGG-CUCUA-----------CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 2604 | 0.69 | 0.423335 |
Target: 5'- cGCGCGgCGGCaGCGggaCCGGGGUccgGGGCc -3' miRNA: 3'- aCGCGCgGCUGgCGC---GGCUCUA---CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 2915 | 0.74 | 0.214559 |
Target: 5'- aGCcgGCGCCGcGCCGCGCCGAGccGcGaGCa -3' miRNA: 3'- aCG--CGCGGC-UGGCGCGGCUCuaC-C-CG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 2959 | 0.8 | 0.090412 |
Target: 5'- gGCGCcggcgaaGCCGAggucCCGCGCCGAGAgcagagcacccccUGGGCg -3' miRNA: 3'- aCGCG-------CGGCU----GGCGCGGCUCU-------------ACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 3097 | 0.69 | 0.445605 |
Target: 5'- aGCaGCGCCGagaggccGCCGCggcgcgggucccagGCCGGGcgcgGGGCg -3' miRNA: 3'- aCG-CGCGGC-------UGGCG--------------CGGCUCua--CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 3283 | 0.69 | 0.422492 |
Target: 5'- aUGUGCGCCagggcGGCCGgGUCGaAGGUgagcgccGGGCg -3' miRNA: 3'- -ACGCGCGG-----CUGGCgCGGC-UCUA-------CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 3725 | 0.66 | 0.608082 |
Target: 5'- cGgGCGCUGGguCCGgGCCGgcGGcgGGGg -3' miRNA: 3'- aCgCGCGGCU--GGCgCGGC--UCuaCCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 3873 | 0.67 | 0.540532 |
Target: 5'- gGCGCccGCCGccGCCgGCGCCGGcGcUGGGa -3' miRNA: 3'- aCGCG--CGGC--UGG-CGCGGCU-CuACCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 3984 | 0.71 | 0.322722 |
Target: 5'- gGCGaGCCGGCCGCggccacguugGCCGGGGcgaagaGGGCc -3' miRNA: 3'- aCGCgCGGCUGGCG----------CGGCUCUa-----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 4702 | 0.66 | 0.598334 |
Target: 5'- cGC-CGgCGGCCcCGCUGuAGAUGaGGCg -3' miRNA: 3'- aCGcGCgGCUGGcGCGGC-UCUAC-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 4786 | 0.67 | 0.540532 |
Target: 5'- cGgGC-CCGGCCGCGgCGcGGUagcGGGCc -3' miRNA: 3'- aCgCGcGGCUGGCGCgGCuCUA---CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 4995 | 0.67 | 0.531064 |
Target: 5'- aGCgGCGCUucCUGCGCgGGGGccGGGCg -3' miRNA: 3'- aCG-CGCGGcuGGCGCGgCUCUa-CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 5238 | 0.71 | 0.336978 |
Target: 5'- aGCGcCGCgCGGCgGCGgCGGGGgcccgggGGGCg -3' miRNA: 3'- aCGC-GCG-GCUGgCGCgGCUCUa------CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 5350 | 0.68 | 0.484725 |
Target: 5'- gGCGCccucuCCGGCgCgGCGCCG-GcgGGGCu -3' miRNA: 3'- aCGCGc----GGCUG-G-CGCGGCuCuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 5626 | 0.74 | 0.224847 |
Target: 5'- gGCGcCGCCGccGCCggGCGCCGAGAccGGCc -3' miRNA: 3'- aCGC-GCGGC--UGG--CGCGGCUCUacCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 5680 | 0.67 | 0.531064 |
Target: 5'- aGCGgGCCcccGCCGUGCCGGcGcUGcGGCc -3' miRNA: 3'- aCGCgCGGc--UGGCGCGGCU-CuAC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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