Results 21 - 40 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 3' | -62.8 | NC_006151.1 | + | 139918 | 0.66 | 0.617846 |
Target: 5'- cGCGcCGCgGGCuCGuCGCCG---UGGGCc -3' miRNA: 3'- aCGC-GCGgCUG-GC-GCGGCucuACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 96310 | 0.66 | 0.616869 |
Target: 5'- uUGaGCGCCGacugcagGCCGCGCgCGuAGAgcgccGGGUa -3' miRNA: 3'- -ACgCGCGGC-------UGGCGCG-GC-UCUa----CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 55898 | 0.66 | 0.613939 |
Target: 5'- cGUGCGCCGGgcgaccgagcggcuCCGCgauggagGCCGuGAUGGa- -3' miRNA: 3'- aCGCGCGGCU--------------GGCG-------CGGCuCUACCcg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 19367 | 0.66 | 0.608082 |
Target: 5'- aGCGUGUagaGGcCCGUGUCGu--UGGGCg -3' miRNA: 3'- aCGCGCGg--CU-GGCGCGGCucuACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 3725 | 0.66 | 0.608082 |
Target: 5'- cGgGCGCUGGguCCGgGCCGgcGGcgGGGg -3' miRNA: 3'- aCgCGCGGCU--GGCgCGGC--UCuaCCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 8126 | 0.66 | 0.608082 |
Target: 5'- --aGCGCgGACCcCGCCcgguGGggGGGCg -3' miRNA: 3'- acgCGCGgCUGGcGCGGc---UCuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 56304 | 0.66 | 0.608082 |
Target: 5'- gGCGgaCGCCGcGCgGUGCCuGAGccUGGGCc -3' miRNA: 3'- aCGC--GCGGC-UGgCGCGG-CUCu-ACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 58872 | 0.66 | 0.608082 |
Target: 5'- gGCGCGCCGGguCCGUccagGCCGuguAGAUcccGGCc -3' miRNA: 3'- aCGCGCGGCU--GGCG----CGGC---UCUAc--CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 63789 | 0.66 | 0.608082 |
Target: 5'- gGCgGgGUCGGCCGUcgccagcgccucGCCGGGccccgGGGCg -3' miRNA: 3'- aCG-CgCGGCUGGCG------------CGGCUCua---CCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 69569 | 0.66 | 0.608082 |
Target: 5'- cUGCGCaCCGgguGCCGCGCCGcGAcGaGCu -3' miRNA: 3'- -ACGCGcGGC---UGGCGCGGCuCUaCcCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 120898 | 0.66 | 0.608082 |
Target: 5'- cGCGCccGCUGGUgGUGCUGGGccUGGGCg -3' miRNA: 3'- aCGCG--CGGCUGgCGCGGCUCu-ACCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 139808 | 0.66 | 0.608082 |
Target: 5'- cGCGCGCCGccgucuCCGCGacgcaCGcgcGGGUcGGCg -3' miRNA: 3'- aCGCGCGGCu-----GGCGCg----GC---UCUAcCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 138628 | 0.66 | 0.608082 |
Target: 5'- cGC-CGCCGGgggCGCGCCGGacUGGGa -3' miRNA: 3'- aCGcGCGGCUg--GCGCGGCUcuACCCg -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 89485 | 0.66 | 0.608082 |
Target: 5'- gUGCGCGgCGGCgagccgguaCGCGCgGGuGUGGcGCa -3' miRNA: 3'- -ACGCGCgGCUG---------GCGCGgCUcUACC-CG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 59451 | 0.66 | 0.608082 |
Target: 5'- cGC-CGCCgcGACCGCgGCCGAGuccaccuccGGCg -3' miRNA: 3'- aCGcGCGG--CUGGCG-CGGCUCuac------CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 127530 | 0.66 | 0.608082 |
Target: 5'- gGCGCGUCaGCgGgGCCcAGG-GGGCg -3' miRNA: 3'- aCGCGCGGcUGgCgCGGcUCUaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 121509 | 0.66 | 0.608082 |
Target: 5'- aUGgGCGCC--CCGC-CCGAGAaGcGGCu -3' miRNA: 3'- -ACgCGCGGcuGGCGcGGCUCUaC-CCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 89259 | 0.66 | 0.607106 |
Target: 5'- aGCGCcgucgugGUCGACgGCGCCGcggcGAUGGccGCc -3' miRNA: 3'- aCGCG-------CGGCUGgCGCGGCu---CUACC--CG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 57312 | 0.66 | 0.607106 |
Target: 5'- gGCGCgGCCGaaGCCGCugcgcgacgggaaGCCGAcaaaguccGcgGGGCc -3' miRNA: 3'- aCGCG-CGGC--UGGCG-------------CGGCU--------CuaCCCG- -5' |
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29377 | 3' | -62.8 | NC_006151.1 | + | 25331 | 0.66 | 0.607106 |
Target: 5'- aGCGCcgggacgGCCGG-CGUGCCGcgauaucacaucGGAUGGGa -3' miRNA: 3'- aCGCG-------CGGCUgGCGCGGC------------UCUACCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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