miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29377 3' -62.8 NC_006151.1 + 139918 0.66 0.617846
Target:  5'- cGCGcCGCgGGCuCGuCGCCG---UGGGCc -3'
miRNA:   3'- aCGC-GCGgCUG-GC-GCGGCucuACCCG- -5'
29377 3' -62.8 NC_006151.1 + 96310 0.66 0.616869
Target:  5'- uUGaGCGCCGacugcagGCCGCGCgCGuAGAgcgccGGGUa -3'
miRNA:   3'- -ACgCGCGGC-------UGGCGCG-GC-UCUa----CCCG- -5'
29377 3' -62.8 NC_006151.1 + 55898 0.66 0.613939
Target:  5'- cGUGCGCCGGgcgaccgagcggcuCCGCgauggagGCCGuGAUGGa- -3'
miRNA:   3'- aCGCGCGGCU--------------GGCG-------CGGCuCUACCcg -5'
29377 3' -62.8 NC_006151.1 + 19367 0.66 0.608082
Target:  5'- aGCGUGUagaGGcCCGUGUCGu--UGGGCg -3'
miRNA:   3'- aCGCGCGg--CU-GGCGCGGCucuACCCG- -5'
29377 3' -62.8 NC_006151.1 + 3725 0.66 0.608082
Target:  5'- cGgGCGCUGGguCCGgGCCGgcGGcgGGGg -3'
miRNA:   3'- aCgCGCGGCU--GGCgCGGC--UCuaCCCg -5'
29377 3' -62.8 NC_006151.1 + 8126 0.66 0.608082
Target:  5'- --aGCGCgGACCcCGCCcgguGGggGGGCg -3'
miRNA:   3'- acgCGCGgCUGGcGCGGc---UCuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 56304 0.66 0.608082
Target:  5'- gGCGgaCGCCGcGCgGUGCCuGAGccUGGGCc -3'
miRNA:   3'- aCGC--GCGGC-UGgCGCGG-CUCu-ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 58872 0.66 0.608082
Target:  5'- gGCGCGCCGGguCCGUccagGCCGuguAGAUcccGGCc -3'
miRNA:   3'- aCGCGCGGCU--GGCG----CGGC---UCUAc--CCG- -5'
29377 3' -62.8 NC_006151.1 + 63789 0.66 0.608082
Target:  5'- gGCgGgGUCGGCCGUcgccagcgccucGCCGGGccccgGGGCg -3'
miRNA:   3'- aCG-CgCGGCUGGCG------------CGGCUCua---CCCG- -5'
29377 3' -62.8 NC_006151.1 + 69569 0.66 0.608082
Target:  5'- cUGCGCaCCGgguGCCGCGCCGcGAcGaGCu -3'
miRNA:   3'- -ACGCGcGGC---UGGCGCGGCuCUaCcCG- -5'
29377 3' -62.8 NC_006151.1 + 120898 0.66 0.608082
Target:  5'- cGCGCccGCUGGUgGUGCUGGGccUGGGCg -3'
miRNA:   3'- aCGCG--CGGCUGgCGCGGCUCu-ACCCG- -5'
29377 3' -62.8 NC_006151.1 + 139808 0.66 0.608082
Target:  5'- cGCGCGCCGccgucuCCGCGacgcaCGcgcGGGUcGGCg -3'
miRNA:   3'- aCGCGCGGCu-----GGCGCg----GC---UCUAcCCG- -5'
29377 3' -62.8 NC_006151.1 + 138628 0.66 0.608082
Target:  5'- cGC-CGCCGGgggCGCGCCGGacUGGGa -3'
miRNA:   3'- aCGcGCGGCUg--GCGCGGCUcuACCCg -5'
29377 3' -62.8 NC_006151.1 + 89485 0.66 0.608082
Target:  5'- gUGCGCGgCGGCgagccgguaCGCGCgGGuGUGGcGCa -3'
miRNA:   3'- -ACGCGCgGCUG---------GCGCGgCUcUACC-CG- -5'
29377 3' -62.8 NC_006151.1 + 59451 0.66 0.608082
Target:  5'- cGC-CGCCgcGACCGCgGCCGAGuccaccuccGGCg -3'
miRNA:   3'- aCGcGCGG--CUGGCG-CGGCUCuac------CCG- -5'
29377 3' -62.8 NC_006151.1 + 127530 0.66 0.608082
Target:  5'- gGCGCGUCaGCgGgGCCcAGG-GGGCg -3'
miRNA:   3'- aCGCGCGGcUGgCgCGGcUCUaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 121509 0.66 0.608082
Target:  5'- aUGgGCGCC--CCGC-CCGAGAaGcGGCu -3'
miRNA:   3'- -ACgCGCGGcuGGCGcGGCUCUaC-CCG- -5'
29377 3' -62.8 NC_006151.1 + 89259 0.66 0.607106
Target:  5'- aGCGCcgucgugGUCGACgGCGCCGcggcGAUGGccGCc -3'
miRNA:   3'- aCGCG-------CGGCUGgCGCGGCu---CUACC--CG- -5'
29377 3' -62.8 NC_006151.1 + 57312 0.66 0.607106
Target:  5'- gGCGCgGCCGaaGCCGCugcgcgacgggaaGCCGAcaaaguccGcgGGGCc -3'
miRNA:   3'- aCGCG-CGGC--UGGCG-------------CGGCU--------CuaCCCG- -5'
29377 3' -62.8 NC_006151.1 + 25331 0.66 0.607106
Target:  5'- aGCGCcgggacgGCCGG-CGUGCCGcgauaucacaucGGAUGGGa -3'
miRNA:   3'- aCGCG-------CGGCUgGCGCGGC------------UCUACCCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.