Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29377 | 5' | -57.2 | NC_006151.1 | + | 25383 | 0.68 | 0.754606 |
Target: 5'- uGACggcgGCGgugguUCUCgaCCGCGACgGGGGCGc -3' miRNA: 3'- cCUGa---UGU-----AGAG--GGUGCUGgCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 2843 | 0.68 | 0.754606 |
Target: 5'- cGGACguagACgugguaGUCcCCCACGGCCGGGcCGu -3' miRNA: 3'- -CCUGa---UG------UAGaGGGUGCUGGCCCcGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 4200 | 0.68 | 0.754606 |
Target: 5'- aGGCagGCGgg-CCCgaggGCGGCCGGGGCGc -3' miRNA: 3'- cCUGa-UGUagaGGG----UGCUGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 69330 | 0.68 | 0.745079 |
Target: 5'- cGGGC-GCGUCgccgCCCGCGAgCGcGGCGu -3' miRNA: 3'- -CCUGaUGUAGa---GGGUGCUgGCcCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 18733 | 0.68 | 0.745079 |
Target: 5'- aGAUcGCGUCgUCgCCGCcGCCGGGGCc -3' miRNA: 3'- cCUGaUGUAG-AG-GGUGcUGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 88854 | 0.68 | 0.745079 |
Target: 5'- aGGA--GCcgCUCCCGCGGgagcuCCGGGcGCGg -3' miRNA: 3'- -CCUgaUGuaGAGGGUGCU-----GGCCC-CGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 125004 | 0.69 | 0.735455 |
Target: 5'- cGACUGCGUCcUCCGCGAggccUCGGaGGCc -3' miRNA: 3'- cCUGAUGUAGaGGGUGCU----GGCC-CCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 133616 | 0.69 | 0.725744 |
Target: 5'- gGGGCgucuggGgGUCg-CgGCGGCCGGGGCGg -3' miRNA: 3'- -CCUGa-----UgUAGagGgUGCUGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 88128 | 0.69 | 0.706094 |
Target: 5'- cGGGCggGCG-CUCCgCACGuugagcagGCCGGGGUg -3' miRNA: 3'- -CCUGa-UGUaGAGG-GUGC--------UGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 21523 | 0.69 | 0.706094 |
Target: 5'- cGGGCUcggGCuUCggCCGgGGCCGGGGCc -3' miRNA: 3'- -CCUGA---UGuAGagGGUgCUGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 34574 | 0.69 | 0.706094 |
Target: 5'- -cGCU-CGUCUCuCCGacCGGCUGGGGCGc -3' miRNA: 3'- ccUGAuGUAGAG-GGU--GCUGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 50361 | 0.69 | 0.696173 |
Target: 5'- -cGCcGCGUCUCCgC-CGGCgGGGGCGa -3' miRNA: 3'- ccUGaUGUAGAGG-GuGCUGgCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 24328 | 0.69 | 0.695177 |
Target: 5'- cGGAUgaggucgaucaggUGCAUCUCCCcguUGAUCGcGGGCu -3' miRNA: 3'- -CCUG-------------AUGUAGAGGGu--GCUGGC-CCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 22801 | 0.7 | 0.66613 |
Target: 5'- uGGGC--CGUCUCCC-CGGCCgucaggugcagGGGGCGc -3' miRNA: 3'- -CCUGauGUAGAGGGuGCUGG-----------CCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 9025 | 0.7 | 0.645953 |
Target: 5'- cGGACccc--CUCCCGCccGCCGGGGCGc -3' miRNA: 3'- -CCUGauguaGAGGGUGc-UGGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 8300 | 0.7 | 0.645953 |
Target: 5'- cGGGCgccGCGUCccgCCC-CGAgcccCCGGGGCGc -3' miRNA: 3'- -CCUGa--UGUAGa--GGGuGCU----GGCCCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 28240 | 0.71 | 0.615627 |
Target: 5'- cGGGCcgACGgg-CCCAuUGGCCGGGGCc -3' miRNA: 3'- -CCUGa-UGUagaGGGU-GCUGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 135602 | 0.71 | 0.615627 |
Target: 5'- cGGCU-CAUaagccCUCCCACGGCCGcGGCGc -3' miRNA: 3'- cCUGAuGUA-----GAGGGUGCUGGCcCCGU- -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 39832 | 0.72 | 0.565417 |
Target: 5'- cGuCUuCGUCUCCUGCGgccGCCGGGGCc -3' miRNA: 3'- cCuGAuGUAGAGGGUGC---UGGCCCCGu -5' |
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29377 | 5' | -57.2 | NC_006151.1 | + | 62524 | 0.72 | 0.565417 |
Target: 5'- cGGuacCUGCAgaagCgCCugCACGGCCGGGGCAa -3' miRNA: 3'- -CCu--GAUGUa---GaGG--GUGCUGGCCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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