miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 3' -58.8 NC_006151.1 + 139006 0.69 0.595978
Target:  5'- ---cGCGACCUcCGCGaGGACCCCAu -3'
miRNA:   3'- ugcaUGUUGGGcGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 136406 0.68 0.626362
Target:  5'- cUGaGCGGCUaCGCGCG-GGGCCCCGc -3'
miRNA:   3'- uGCaUGUUGG-GCGCGCaCCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 136318 1.05 0.002613
Target:  5'- cACGUACAACCCGCGCGUGGACCCCAAc -3'
miRNA:   3'- -UGCAUGUUGGGCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 135884 0.71 0.48689
Target:  5'- cGCGUGCGGCCCGUGUucGUcgccgccGcGACCCCGg -3'
miRNA:   3'- -UGCAUGUUGGGCGCG--CA-------C-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 134827 0.67 0.736429
Target:  5'- nACGgugGCGACCgCGCGCGcacacacgcgGGGCCCg-- -3'
miRNA:   3'- -UGCa--UGUUGG-GCGCGCa---------CCUGGGguu -5'
29378 3' -58.8 NC_006151.1 + 134804 0.73 0.381564
Target:  5'- cGCG-GCGGCCCGCGCc-GGACCCgGAc -3'
miRNA:   3'- -UGCaUGUUGGGCGCGcaCCUGGGgUU- -5'
29378 3' -58.8 NC_006151.1 + 134753 0.69 0.61622
Target:  5'- cCGaGCAGCgCGCGCG-GGGCCCgCGg -3'
miRNA:   3'- uGCaUGUUGgGCGCGCaCCUGGG-GUu -5'
29378 3' -58.8 NC_006151.1 + 133157 0.72 0.432805
Target:  5'- gGCG-GCGGCgCGgGCGUGGGCCUCGg -3'
miRNA:   3'- -UGCaUGUUGgGCgCGCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 130534 0.72 0.414412
Target:  5'- cGCGUACAcgccCCCGCGCGaGGgcggcgcgcugccGCCCCAc -3'
miRNA:   3'- -UGCAUGUu---GGGCGCGCaCC-------------UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 130257 0.66 0.746077
Target:  5'- cGCGgaagaGGCCgGCGCGcGG-CCCCGAg -3'
miRNA:   3'- -UGCaug--UUGGgCGCGCaCCuGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 129781 0.71 0.478426
Target:  5'- gGCGUcGCu-CCCGCcgGCGUGGGCCCgCAu -3'
miRNA:   3'- -UGCA-UGuuGGGCG--CGCACCUGGG-GUu -5'
29378 3' -58.8 NC_006151.1 + 129041 0.68 0.676982
Target:  5'- cGCGUACAcCUCGCG-GUGcGGCUCCGc -3'
miRNA:   3'- -UGCAUGUuGGGCGCgCAC-CUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 128606 0.74 0.342067
Target:  5'- cGCGcGCcACCCGCgGCGUGcGCCCCAGg -3'
miRNA:   3'- -UGCaUGuUGGGCG-CGCACcUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 128220 0.71 0.478426
Target:  5'- gGCGUGCGACgaGCuCGUGGGCgCCAGg -3'
miRNA:   3'- -UGCAUGUUGggCGcGCACCUGgGGUU- -5'
29378 3' -58.8 NC_006151.1 + 128190 0.68 0.626362
Target:  5'- gGCGaGCGugCCGCGCuccaUGGcGCCCCAn -3'
miRNA:   3'- -UGCaUGUugGGCGCGc---ACC-UGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 125183 0.69 0.57584
Target:  5'- aGCGccuCGGCCUcgccgGCGuCGUGGGCCCCGc -3'
miRNA:   3'- -UGCau-GUUGGG-----CGC-GCACCUGGGGUu -5'
29378 3' -58.8 NC_006151.1 + 124672 0.71 0.49733
Target:  5'- --cUACGGCCUGCGCGaggGGGCCCaCGGg -3'
miRNA:   3'- ugcAUGUUGGGCGCGCa--CCUGGG-GUU- -5'
29378 3' -58.8 NC_006151.1 + 123738 0.67 0.684021
Target:  5'- gGCGU-CAuGCCCGCuguggcggucuuugGCGcGGGCCCCGGg -3'
miRNA:   3'- -UGCAuGU-UGGGCG--------------CGCaCCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 122311 0.81 0.12003
Target:  5'- cACGcgGCAGCUggcggUGCGCGUGGACCCCGAg -3'
miRNA:   3'- -UGCa-UGUUGG-----GCGCGCACCUGGGGUU- -5'
29378 3' -58.8 NC_006151.1 + 122032 0.67 0.740299
Target:  5'- cACGUACGGCggGCGCGUGGAgacggagcugcaguuCCuCCAc -3'
miRNA:   3'- -UGCAUGUUGggCGCGCACCU---------------GG-GGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.