miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29378 5' -63.9 NC_006151.1 + 136352 1.09 0.000579
Target:  5'- gGCCUGGACCCCGCGGGGCUGCUCUCGu -3'
miRNA:   3'- -CGGACCUGGGGCGCCCCGACGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 106783 0.81 0.065288
Target:  5'- cGCCUGGACCuggCCGCGGcGGCggUGCUCgUCGg -3'
miRNA:   3'- -CGGACCUGG---GGCGCC-CCG--ACGAG-AGC- -5'
29378 5' -63.9 NC_006151.1 + 8187 0.77 0.116631
Target:  5'- gGCCgGGACCCCG-GGGGC-GCUC-CGg -3'
miRNA:   3'- -CGGaCCUGGGGCgCCCCGaCGAGaGC- -5'
29378 5' -63.9 NC_006151.1 + 127402 0.74 0.172463
Target:  5'- gGCCgagucgacgGGAgCCCGCGGGGUcGC-CUCGg -3'
miRNA:   3'- -CGGa--------CCUgGGGCGCCCCGaCGaGAGC- -5'
29378 5' -63.9 NC_006151.1 + 49167 0.74 0.180925
Target:  5'- gGCCUGGGCgCgCCGCGGGGUgcUGCUgCUg- -3'
miRNA:   3'- -CGGACCUG-G-GGCGCCCCG--ACGA-GAgc -5'
29378 5' -63.9 NC_006151.1 + 106646 0.74 0.184851
Target:  5'- cGCCUGGACgCCGCGGcgcacgugcgcgaGGCcGCggcgCUCGg -3'
miRNA:   3'- -CGGACCUGgGGCGCC-------------CCGaCGa---GAGC- -5'
29378 5' -63.9 NC_006151.1 + 6074 0.73 0.203701
Target:  5'- cGCCcGaGCCCCgGCGGGGCUGCUgCUg- -3'
miRNA:   3'- -CGGaCcUGGGG-CGCCCCGACGA-GAgc -5'
29378 5' -63.9 NC_006151.1 + 107207 0.72 0.245292
Target:  5'- uGCCggagaUGGACCCCGCGGacccGCUGUUCa-- -3'
miRNA:   3'- -CGG-----ACCUGGGGCGCCc---CGACGAGagc -5'
29378 5' -63.9 NC_006151.1 + 39145 0.71 0.280929
Target:  5'- gGCCUGGGaCCCGCGccgcGGCgGCcUCUCGg -3'
miRNA:   3'- -CGGACCUgGGGCGCc---CCGaCG-AGAGC- -5'
29378 5' -63.9 NC_006151.1 + 61881 0.71 0.306227
Target:  5'- cGCCUGGACCcuccaggCCGUGGuGCUGCUgaUGg -3'
miRNA:   3'- -CGGACCUGG-------GGCGCCcCGACGAgaGC- -5'
29378 5' -63.9 NC_006151.1 + 86339 0.7 0.326849
Target:  5'- cGCCgUGGGCCCgGacuucuuCGGGGacaugcgGCUCUCGg -3'
miRNA:   3'- -CGG-ACCUGGGgC-------GCCCCga-----CGAGAGC- -5'
29378 5' -63.9 NC_006151.1 + 50448 0.7 0.334664
Target:  5'- gGCCUGGGCaccgCCCGCGGGcGCUcGCgccagCgCGg -3'
miRNA:   3'- -CGGACCUG----GGGCGCCC-CGA-CGa----GaGC- -5'
29378 5' -63.9 NC_006151.1 + 66055 0.7 0.334664
Target:  5'- uGCCUguccaGGACCCCGCGGacGGCcGC-CUgGg -3'
miRNA:   3'- -CGGA-----CCUGGGGCGCC--CCGaCGaGAgC- -5'
29378 5' -63.9 NC_006151.1 + 137269 0.7 0.341887
Target:  5'- cGCCcGGugCCCGCGGGcacGCUCgaggCGg -3'
miRNA:   3'- -CGGaCCugGGGCGCCCcgaCGAGa---GC- -5'
29378 5' -63.9 NC_006151.1 + 103420 0.7 0.341887
Target:  5'- -gCUGGGCCCgGCGGuGGacCUGCUCgCGc -3'
miRNA:   3'- cgGACCUGGGgCGCC-CC--GACGAGaGC- -5'
29378 5' -63.9 NC_006151.1 + 69961 0.7 0.349221
Target:  5'- aGCCccccgGGGCCgCGCGGGcGCUGCag-CGg -3'
miRNA:   3'- -CGGa----CCUGGgGCGCCC-CGACGagaGC- -5'
29378 5' -63.9 NC_006151.1 + 62104 0.69 0.379666
Target:  5'- gGCCUGGGCgcggCCGUGgucGGGCUGaugCUCGg -3'
miRNA:   3'- -CGGACCUGg---GGCGC---CCCGACga-GAGC- -5'
29378 5' -63.9 NC_006151.1 + 37413 0.69 0.379666
Target:  5'- cGCCggGGACuCCCGCGaGGG--GCUCUgGg -3'
miRNA:   3'- -CGGa-CCUG-GGGCGC-CCCgaCGAGAgC- -5'
29378 5' -63.9 NC_006151.1 + 17818 0.69 0.393935
Target:  5'- uCCUGGGCgCgGCGGGGCggGCggccaccacccgCUCGc -3'
miRNA:   3'- cGGACCUGgGgCGCCCCGa-CGa-----------GAGC- -5'
29378 5' -63.9 NC_006151.1 + 5788 0.69 0.403638
Target:  5'- cGCgggGGACCaucuCCGCGGGGCUGC-Cg-- -3'
miRNA:   3'- -CGga-CCUGG----GGCGCCCCGACGaGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.