Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29378 | 5' | -63.9 | NC_006151.1 | + | 2281 | 0.67 | 0.489984 |
Target: 5'- gGCCggcgGGGCgCCCGCGGcGGCgacgGCgCcCGg -3' miRNA: 3'- -CGGa---CCUG-GGGCGCC-CCGa---CGaGaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 3941 | 0.66 | 0.544773 |
Target: 5'- gGCCgggcgcGGGCUCCGCGGGcccgggccgcgcgGCgGC-CUCGg -3' miRNA: 3'- -CGGa-----CCUGGGGCGCCC-------------CGaCGaGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 5359 | 0.66 | 0.555221 |
Target: 5'- uCCggcGcGGCgCCgGCGGGGCUGuCUCUgCGg -3' miRNA: 3'- cGGa--C-CUG-GGgCGCCCCGAC-GAGA-GC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 5531 | 0.67 | 0.4991 |
Target: 5'- gGCCgaGGaucgagccGCCUCGCGGcGGCggGCUCgUCGa -3' miRNA: 3'- -CGGa-CC--------UGGGGCGCC-CCGa-CGAG-AGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 5788 | 0.69 | 0.403638 |
Target: 5'- cGCgggGGACCaucuCCGCGGGGCUGC-Cg-- -3' miRNA: 3'- -CGga-CCUGG----GGCGCCCCGACGaGagc -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 5870 | 0.66 | 0.56477 |
Target: 5'- cGCCcgGGGCCgCCG-GGGGCcccgGC-CUCu -3' miRNA: 3'- -CGGa-CCUGG-GGCgCCCCGa---CGaGAGc -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 6074 | 0.73 | 0.203701 |
Target: 5'- cGCCcGaGCCCCgGCGGGGCUGCUgCUg- -3' miRNA: 3'- -CGGaCcUGGGG-CGCCCCGACGA-GAgc -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 6849 | 0.67 | 0.480946 |
Target: 5'- uGCCcGGcCCCCGCGGcGGCca-UCUUGc -3' miRNA: 3'- -CGGaCCuGGGGCGCC-CCGacgAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 7014 | 0.68 | 0.454337 |
Target: 5'- uGUCcGGcCCCCGCGGcGGCca-UCUCGg -3' miRNA: 3'- -CGGaCCuGGGGCGCC-CCGacgAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 8187 | 0.77 | 0.116631 |
Target: 5'- gGCCgGGACCCCG-GGGGC-GCUC-CGg -3' miRNA: 3'- -CGGaCCUGGGGCgCCCCGaCGAGaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 17818 | 0.69 | 0.393935 |
Target: 5'- uCCUGGGCgCgGCGGGGCggGCggccaccacccgCUCGc -3' miRNA: 3'- cGGACCUGgGgCGCCCCGa-CGa-----------GAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 18751 | 0.66 | 0.517553 |
Target: 5'- cGCCgGGGCCCCaCGGGG-UGC-C-CGg -3' miRNA: 3'- -CGGaCCUGGGGcGCCCCgACGaGaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 36385 | 0.68 | 0.428545 |
Target: 5'- gGCCgGGGCCCC-CGGcGGCcccggGCgCUCGu -3' miRNA: 3'- -CGGaCCUGGGGcGCC-CCGa----CGaGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 37413 | 0.69 | 0.379666 |
Target: 5'- cGCCggGGACuCCCGCGaGGG--GCUCUgGg -3' miRNA: 3'- -CGGa-CCUG-GGGCGC-CCCgaCGAGAgC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 39145 | 0.71 | 0.280929 |
Target: 5'- gGCCUGGGaCCCGCGccgcGGCgGCcUCUCGg -3' miRNA: 3'- -CGGACCUgGGGCGCc---CCGaCG-AGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 39263 | 0.66 | 0.536272 |
Target: 5'- cGCCUcaacGCCCaGgGGGugcuGCUGCUCUCGg -3' miRNA: 3'- -CGGAcc--UGGGgCgCCC----CGACGAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 49167 | 0.74 | 0.180925 |
Target: 5'- gGCCUGGGCgCgCCGCGGGGUgcUGCUgCUg- -3' miRNA: 3'- -CGGACCUG-G-GGCGCCCCG--ACGA-GAgc -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 50448 | 0.7 | 0.334664 |
Target: 5'- gGCCUGGGCaccgCCCGCGGGcGCUcGCgccagCgCGg -3' miRNA: 3'- -CGGACCUG----GGGCGCCC-CGA-CGa----GaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 50871 | 0.66 | 0.574362 |
Target: 5'- cGCCcccGGACCCCGUcccGGGGCcgGC-CgCGc -3' miRNA: 3'- -CGGa--CCUGGGGCG---CCCCGa-CGaGaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 61881 | 0.71 | 0.306227 |
Target: 5'- cGCCUGGACCcuccaggCCGUGGuGCUGCUgaUGg -3' miRNA: 3'- -CGGACCUGG-------GGCGCCcCGACGAgaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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