Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29378 | 5' | -63.9 | NC_006151.1 | + | 131503 | 0.67 | 0.502768 |
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Target: 5'- aCCaGGAgcCCCgCGCGGGggaacggcuggaagcGCUGCUCUUGc -3' miRNA: 3'- cGGaCCU--GGG-GCGCCC---------------CGACGAGAGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 136352 | 1.09 | 0.000579 |
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Target: 5'- gGCCUGGACCCCGCGGGGCUGCUCUCGu -3' miRNA: 3'- -CGGACCUGGGGCGCCCCGACGAGAGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 136403 | 0.66 | 0.540045 |
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Target: 5'- uGCCUgagcggcuacgcgcgGGGCCCCGCGGcGGCgcacgccgcgcGCUacgUCGa -3' miRNA: 3'- -CGGA---------------CCUGGGGCGCC-CCGa----------CGAg--AGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 136618 | 0.67 | 0.489984 |
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Target: 5'- cGCCgucaacgucacGGACCCCGCggcgcccguGGGGC-GCUCgccccUCGg -3' miRNA: 3'- -CGGa----------CCUGGGGCG---------CCCCGaCGAG-----AGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 137269 | 0.7 | 0.341887 |
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Target: 5'- cGCCcGGugCCCGCGGGcacGCUCgaggCGg -3' miRNA: 3'- -CGGaCCugGGGCGCCCcgaCGAGa---GC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 138581 | 0.66 | 0.555221 |
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Target: 5'- cGCCUGccccACCCCgucguguacGCGGcGCUGCcgCUCGg -3' miRNA: 3'- -CGGACc---UGGGG---------CGCCcCGACGa-GAGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 140190 | 0.66 | 0.568602 |
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Target: 5'- -gCUGGACCCCaucguggccaccGCGGGGgcggugcugcagaacCUGCgccugaagCUCGg -3' miRNA: 3'- cgGACCUGGGG------------CGCCCC---------------GACGa-------GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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