miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 127468 0.66 0.952581
Target:  5'- gCGCUgggCggcGCGGaacGAGCCGCGGacccCGCGCCg -3'
miRNA:   3'- -GCGGa--Ga--UGCC---CUUGGUGUU----GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 96351 0.66 0.95574
Target:  5'- gGCCUCccgccagaaccaGCGGaGGGCCGCcuccACGCGCg -3'
miRNA:   3'- gCGGAGa-----------UGCC-CUUGGUGu---UGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 60628 0.66 0.952581
Target:  5'- cCGCCgUCgucgggGCGGGGcuCC-CGGCccGCGCCg -3'
miRNA:   3'- -GCGG-AGa-----UGCCCUu-GGuGUUG--UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 111765 0.66 0.952581
Target:  5'- gGCCcagCUGCGauGAGgCGCAGCACGUa -3'
miRNA:   3'- gCGGa--GAUGCc-CUUgGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 82986 0.66 0.952581
Target:  5'- gCGCgUCUGCGcc-GCCACGGC-CGCg -3'
miRNA:   3'- -GCGgAGAUGCccuUGGUGUUGuGCGg -5'
29379 3' -54.5 NC_006151.1 + 75105 0.66 0.952581
Target:  5'- gGCgUUgcCGGGcGCCAgCAGCugGUCg -3'
miRNA:   3'- gCGgAGauGCCCuUGGU-GUUGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 15153 0.66 0.952581
Target:  5'- cCGCCgacgugACGGGcgaCACG-CGCGCCc -3'
miRNA:   3'- -GCGGaga---UGCCCuugGUGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 4999 0.66 0.952581
Target:  5'- gCGCUUCcugcGCGGGGGCCG-GGCGgGCUc -3'
miRNA:   3'- -GCGGAGa---UGCCCUUGGUgUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 4267 0.66 0.952581
Target:  5'- gGCgCUCga-GGacGCCGCGGCAgGCCa -3'
miRNA:   3'- gCG-GAGaugCCcuUGGUGUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 142985 0.66 0.956124
Target:  5'- uGCC---GCGGGugggcccGACCGCAGCAuCGCg -3'
miRNA:   3'- gCGGagaUGCCC-------UUGGUGUUGU-GCGg -5'
29379 3' -54.5 NC_006151.1 + 115173 0.66 0.956507
Target:  5'- aGCCgcgCgGCaGGGGGcgcuCCAgcCAGCGCGCCg -3'
miRNA:   3'- gCGGa--GaUG-CCCUU----GGU--GUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 24920 0.66 0.956507
Target:  5'- aGCCcgaCUGCaGGGGCUGCAGCACcUCg -3'
miRNA:   3'- gCGGa--GAUGcCCUUGGUGUUGUGcGG- -5'
29379 3' -54.5 NC_006151.1 + 102637 0.66 0.956507
Target:  5'- gCGCgCUCgagGCGGcGcucgaGGCCGCc-CACGCCa -3'
miRNA:   3'- -GCG-GAGa--UGCC-C-----UUGGUGuuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 65796 0.66 0.956507
Target:  5'- gCGCCgcccgGCGcGGAcguGCCGCGGuggaugggcggcCGCGCCa -3'
miRNA:   3'- -GCGGaga--UGC-CCU---UGGUGUU------------GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 56332 0.66 0.956507
Target:  5'- gGCCggugGCuGGAGCgCGCG-CGCGCCc -3'
miRNA:   3'- gCGGaga-UGcCCUUG-GUGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 39738 0.66 0.956507
Target:  5'- cCGCgCUCgggcuCGGGGACCcgGACuuugacgcggGCGCCg -3'
miRNA:   3'- -GCG-GAGau---GCCCUUGGugUUG----------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 124036 0.66 0.956507
Target:  5'- gGCCcCcgacggcgagUACGGcGACCugGACGCGCg -3'
miRNA:   3'- gCGGaG----------AUGCCcUUGGugUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 117836 0.66 0.956507
Target:  5'- gGCCgggGCGGGccggacucuACCACcGC-CGCCg -3'
miRNA:   3'- gCGGagaUGCCCu--------UGGUGuUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 86572 0.66 0.956507
Target:  5'- aGCuCUCggcGCGGGcgcgcuccgAGCUGCuggcGCGCGCCg -3'
miRNA:   3'- gCG-GAGa--UGCCC---------UUGGUGu---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 84820 0.66 0.956507
Target:  5'- gGCCgcggACGGG-GCCGCGagguGCAgauCGCCa -3'
miRNA:   3'- gCGGaga-UGCCCuUGGUGU----UGU---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.