miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 136174 1.11 0.002969
Target:  5'- gCGCCUCUACGGGAACCACAACACGCCc -3'
miRNA:   3'- -GCGGAGAUGCCCUUGGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 79685 0.84 0.174295
Target:  5'- uCGCCgCcGCGGGGACCGCAGCcgaaACGCCg -3'
miRNA:   3'- -GCGGaGaUGCCCUUGGUGUUG----UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 64291 0.82 0.218316
Target:  5'- gCGCCgcgUUGuCGGGcguGCCGCAGCGCGCCg -3'
miRNA:   3'- -GCGGa--GAU-GCCCu--UGGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 36863 0.82 0.240766
Target:  5'- gGCCUCgcCGGGGACgGCGGgGCGCCc -3'
miRNA:   3'- gCGGAGauGCCCUUGgUGUUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 20540 0.82 0.240766
Target:  5'- gCGuCCUCgGCGGGGuCCACGACGCGCa -3'
miRNA:   3'- -GC-GGAGaUGCCCUuGGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 120709 0.81 0.265109
Target:  5'- aGCCUC-ACGGGGAUCACGAUgcagucgaaGCGCCc -3'
miRNA:   3'- gCGGAGaUGCCCUUGGUGUUG---------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 81274 0.8 0.298294
Target:  5'- gCGCCUCgGCGGGGAUCucgggcGCGGCGCGCg -3'
miRNA:   3'- -GCGGAGaUGCCCUUGG------UGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 67027 0.79 0.327095
Target:  5'- uGCUgCU-CGGGGACCACGccgaGCGCGCCa -3'
miRNA:   3'- gCGGaGAuGCCCUUGGUGU----UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 7101 0.79 0.327095
Target:  5'- gGCCcgcUCUGCGGccaucuuGGCCGCGGCGCGCCa -3'
miRNA:   3'- gCGG---AGAUGCCc------UUGGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 4384 0.79 0.350016
Target:  5'- uCGCCUCcccggcGCGGGGGuCCGCGGCGCgGCCc -3'
miRNA:   3'- -GCGGAGa-----UGCCCUU-GGUGUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 139642 0.79 0.350016
Target:  5'- gCGCCggcGCGGGggUCGCGgcggGCGCGCCg -3'
miRNA:   3'- -GCGGagaUGCCCuuGGUGU----UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 117525 0.77 0.399191
Target:  5'- gGCCgCU-CGGGGGCCcccucccacgcgGCGACGCGCCg -3'
miRNA:   3'- gCGGaGAuGCCCUUGG------------UGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 26342 0.77 0.416537
Target:  5'- cCGCCUC-ACGGG-GCgGCGGCGgGCCg -3'
miRNA:   3'- -GCGGAGaUGCCCuUGgUGUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 18568 0.77 0.425381
Target:  5'- cCGCC-CggcgGCGGGAG-CACAGCACGCa -3'
miRNA:   3'- -GCGGaGa---UGCCCUUgGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 13187 0.76 0.471209
Target:  5'- gGCCgUCU-CGGGGcCCGCGGCGcCGCCa -3'
miRNA:   3'- gCGG-AGAuGCCCUuGGUGUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 92179 0.76 0.480675
Target:  5'- gCGCCgacggCgACGGG-GCCGcCGACGCGCCg -3'
miRNA:   3'- -GCGGa----GaUGCCCuUGGU-GUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 58222 0.75 0.509605
Target:  5'- aGCCgc-GCGGGAcgagcacgcgcGCCGCcACGCGCCg -3'
miRNA:   3'- gCGGagaUGCCCU-----------UGGUGuUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 100127 0.75 0.509605
Target:  5'- gCGCCUUccuCGGGGACCuGCuggcACGCGCCc -3'
miRNA:   3'- -GCGGAGau-GCCCUUGG-UGu---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 78121 0.75 0.519412
Target:  5'- aCGCCaucCUGCGGcGGGCCGCGG-GCGCCu -3'
miRNA:   3'- -GCGGa--GAUGCC-CUUGGUGUUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 120325 0.75 0.529292
Target:  5'- aGCCUCU-CGGacGCCGCG-CGCGCCc -3'
miRNA:   3'- gCGGAGAuGCCcuUGGUGUuGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.