Results 1 - 20 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29379 | 3' | -54.5 | NC_006151.1 | + | 136174 | 1.11 | 0.002969 |
Target: 5'- gCGCCUCUACGGGAACCACAACACGCCc -3' miRNA: 3'- -GCGGAGAUGCCCUUGGUGUUGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 79685 | 0.84 | 0.174295 |
Target: 5'- uCGCCgCcGCGGGGACCGCAGCcgaaACGCCg -3' miRNA: 3'- -GCGGaGaUGCCCUUGGUGUUG----UGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 64291 | 0.82 | 0.218316 |
Target: 5'- gCGCCgcgUUGuCGGGcguGCCGCAGCGCGCCg -3' miRNA: 3'- -GCGGa--GAU-GCCCu--UGGUGUUGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 36863 | 0.82 | 0.240766 |
Target: 5'- gGCCUCgcCGGGGACgGCGGgGCGCCc -3' miRNA: 3'- gCGGAGauGCCCUUGgUGUUgUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 20540 | 0.82 | 0.240766 |
Target: 5'- gCGuCCUCgGCGGGGuCCACGACGCGCa -3' miRNA: 3'- -GC-GGAGaUGCCCUuGGUGUUGUGCGg -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 120709 | 0.81 | 0.265109 |
Target: 5'- aGCCUC-ACGGGGAUCACGAUgcagucgaaGCGCCc -3' miRNA: 3'- gCGGAGaUGCCCUUGGUGUUG---------UGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 81274 | 0.8 | 0.298294 |
Target: 5'- gCGCCUCgGCGGGGAUCucgggcGCGGCGCGCg -3' miRNA: 3'- -GCGGAGaUGCCCUUGG------UGUUGUGCGg -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 67027 | 0.79 | 0.327095 |
Target: 5'- uGCUgCU-CGGGGACCACGccgaGCGCGCCa -3' miRNA: 3'- gCGGaGAuGCCCUUGGUGU----UGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 7101 | 0.79 | 0.327095 |
Target: 5'- gGCCcgcUCUGCGGccaucuuGGCCGCGGCGCGCCa -3' miRNA: 3'- gCGG---AGAUGCCc------UUGGUGUUGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 4384 | 0.79 | 0.350016 |
Target: 5'- uCGCCUCcccggcGCGGGGGuCCGCGGCGCgGCCc -3' miRNA: 3'- -GCGGAGa-----UGCCCUU-GGUGUUGUG-CGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 139642 | 0.79 | 0.350016 |
Target: 5'- gCGCCggcGCGGGggUCGCGgcggGCGCGCCg -3' miRNA: 3'- -GCGGagaUGCCCuuGGUGU----UGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 117525 | 0.77 | 0.399191 |
Target: 5'- gGCCgCU-CGGGGGCCcccucccacgcgGCGACGCGCCg -3' miRNA: 3'- gCGGaGAuGCCCUUGG------------UGUUGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 26342 | 0.77 | 0.416537 |
Target: 5'- cCGCCUC-ACGGG-GCgGCGGCGgGCCg -3' miRNA: 3'- -GCGGAGaUGCCCuUGgUGUUGUgCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 18568 | 0.77 | 0.425381 |
Target: 5'- cCGCC-CggcgGCGGGAG-CACAGCACGCa -3' miRNA: 3'- -GCGGaGa---UGCCCUUgGUGUUGUGCGg -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 13187 | 0.76 | 0.471209 |
Target: 5'- gGCCgUCU-CGGGGcCCGCGGCGcCGCCa -3' miRNA: 3'- gCGG-AGAuGCCCUuGGUGUUGU-GCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 92179 | 0.76 | 0.480675 |
Target: 5'- gCGCCgacggCgACGGG-GCCGcCGACGCGCCg -3' miRNA: 3'- -GCGGa----GaUGCCCuUGGU-GUUGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 58222 | 0.75 | 0.509605 |
Target: 5'- aGCCgc-GCGGGAcgagcacgcgcGCCGCcACGCGCCg -3' miRNA: 3'- gCGGagaUGCCCU-----------UGGUGuUGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 100127 | 0.75 | 0.509605 |
Target: 5'- gCGCCUUccuCGGGGACCuGCuggcACGCGCCc -3' miRNA: 3'- -GCGGAGau-GCCCUUGG-UGu---UGUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 78121 | 0.75 | 0.519412 |
Target: 5'- aCGCCaucCUGCGGcGGGCCGCGG-GCGCCu -3' miRNA: 3'- -GCGGa--GAUGCC-CUUGGUGUUgUGCGG- -5' |
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29379 | 3' | -54.5 | NC_006151.1 | + | 120325 | 0.75 | 0.529292 |
Target: 5'- aGCCUCU-CGGacGCCGCG-CGCGCCc -3' miRNA: 3'- gCGGAGAuGCCcuUGGUGUuGUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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