miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 60628 0.66 0.952581
Target:  5'- cCGCCgUCgucgggGCGGGGcuCC-CGGCccGCGCCg -3'
miRNA:   3'- -GCGG-AGa-----UGCCCUu-GGuGUUG--UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 85310 0.66 0.950114
Target:  5'- aGCagCUCcACGGGcgcuacgcgcuggagGGCCACAGCGugcuCGCCg -3'
miRNA:   3'- gCG--GAGaUGCCC---------------UUGGUGUUGU----GCGG- -5'
29379 3' -54.5 NC_006151.1 + 44169 0.66 0.948423
Target:  5'- uGCCcCU--GGGAgcACCGCGGguCGCCg -3'
miRNA:   3'- gCGGaGAugCCCU--UGGUGUUguGCGG- -5'
29379 3' -54.5 NC_006151.1 + 76895 0.66 0.948423
Target:  5'- cCGCCUgCUgcgccggcgagaGCGGcauccggucccGGGCCACGuucCGCGCCa -3'
miRNA:   3'- -GCGGA-GA------------UGCC-----------CUUGGUGUu--GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 116850 0.66 0.948423
Target:  5'- -uUCUCggcgGCGGGGaagGCCGCGuCGuCGCCg -3'
miRNA:   3'- gcGGAGa---UGCCCU---UGGUGUuGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 131550 0.66 0.948423
Target:  5'- gCGCCU---CGGGcGCCGC-ACGgGCCc -3'
miRNA:   3'- -GCGGAgauGCCCuUGGUGuUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 86536 0.66 0.948423
Target:  5'- aCGCCUCgccCGa-GGCCGcCGugGCGCCg -3'
miRNA:   3'- -GCGGAGau-GCccUUGGU-GUugUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 98404 0.66 0.948423
Target:  5'- gCGCCUacgucgagACGGGcACCuGCGAgGCgGCCg -3'
miRNA:   3'- -GCGGAga------UGCCCuUGG-UGUUgUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 70108 0.66 0.948423
Target:  5'- gGCgCga-GCGGGu-CCACGcccGCGCGCCg -3'
miRNA:   3'- gCG-GagaUGCCCuuGGUGU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 126391 0.66 0.94713
Target:  5'- gGCCcgcgCUGCuGGccAGCCGCGucggggcgauggccACGCGCCg -3'
miRNA:   3'- gCGGa---GAUGcCC--UUGGUGU--------------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 50635 0.66 0.945816
Target:  5'- aCGCCUCgGCGacggccgcgggcGGAcccgagucgugcgcgGCCGCAccccCGCGCCg -3'
miRNA:   3'- -GCGGAGaUGC------------CCU---------------UGGUGUu---GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 31742 0.66 0.945816
Target:  5'- gCGCCcgCgcCGGGGACgCGCcugcggcggcgggcGCGCGCCg -3'
miRNA:   3'- -GCGGa-GauGCCCUUG-GUGu-------------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 68520 0.66 0.94448
Target:  5'- cCGCCgggcagcaccaccagCgcgcGCaGGucCCGCGACACGCCg -3'
miRNA:   3'- -GCGGa--------------Ga---UGcCCuuGGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 98336 0.66 0.94403
Target:  5'- gGCC---GCGGG--CCGCGAgACGCCc -3'
miRNA:   3'- gCGGagaUGCCCuuGGUGUUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 123248 0.66 0.94403
Target:  5'- gCGCgUUCUGCGaGGccGCCGCG-CGCGCg -3'
miRNA:   3'- -GCG-GAGAUGC-CCu-UGGUGUuGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 18151 0.66 0.94403
Target:  5'- uGUCg--GCGGGGGCgGCGGCGgGCa -3'
miRNA:   3'- gCGGagaUGCCCUUGgUGUUGUgCGg -5'
29379 3' -54.5 NC_006151.1 + 82308 0.66 0.94403
Target:  5'- gCGCCUCcgcguccGCGaGGAcgGCCACcuccGCGgGCCa -3'
miRNA:   3'- -GCGGAGa------UGC-CCU--UGGUGu---UGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 132635 0.66 0.94403
Target:  5'- cCGCCgUCgGCGcccGGACCugGGC-CGCCa -3'
miRNA:   3'- -GCGG-AGaUGCc--CUUGGugUUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 82647 0.66 0.94403
Target:  5'- -cCCcCUGCGGcGAgggcggcccACCcuGCGGCGCGCCg -3'
miRNA:   3'- gcGGaGAUGCC-CU---------UGG--UGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 68276 0.66 0.94403
Target:  5'- uCGCggCgcCGGGcGCCACGgcggccaggcGCGCGCCc -3'
miRNA:   3'- -GCGgaGauGCCCuUGGUGU----------UGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.