miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2938 3' -58.1 NC_001493.1 + 103738 0.66 0.838945
Target:  5'- aGCaGGUGGCCcuuauCCAacucauguGCgCGGCGAaGCCg -3'
miRNA:   3'- -CG-CCACUGGu----GGUg-------UG-GCCGCUaCGG- -5'
2938 3' -58.1 NC_001493.1 + 15492 0.66 0.83814
Target:  5'- cGCGGUcuucuuugcuccgGACCAUCuCACCa-CGGUGCUa -3'
miRNA:   3'- -CGCCA-------------CUGGUGGuGUGGccGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 131046 0.66 0.83814
Target:  5'- cGCGGUcuucuuugcuccgGACCAUCuCACCa-CGGUGCUa -3'
miRNA:   3'- -CGCCA-------------CUGGUGGuGUGGccGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 57073 0.66 0.830809
Target:  5'- gGCGGaUGGCUuugUUAUACCGGCGG-GCa -3'
miRNA:   3'- -CGCC-ACUGGu--GGUGUGGCCGCUaCGg -5'
2938 3' -58.1 NC_001493.1 + 20420 0.66 0.830809
Target:  5'- -aGGUGACC-CCgaguuccuucauGCGCCGGUcgcgacacGGUGUCu -3'
miRNA:   3'- cgCCACUGGuGG------------UGUGGCCG--------CUACGG- -5'
2938 3' -58.1 NC_001493.1 + 131023 0.66 0.830809
Target:  5'- cCGGUGGCC-CC--GCCGGUccguuuAUGCCg -3'
miRNA:   3'- cGCCACUGGuGGugUGGCCGc-----UACGG- -5'
2938 3' -58.1 NC_001493.1 + 58806 0.66 0.830809
Target:  5'- cGCGGgccGACCgACCGguaucgACCGGCGuggauUGUCg -3'
miRNA:   3'- -CGCCa--CUGG-UGGUg-----UGGCCGCu----ACGG- -5'
2938 3' -58.1 NC_001493.1 + 37032 0.66 0.822499
Target:  5'- gGCGGggcgGACCGCCAgcgacCACaaCGGCccGAUGgCa -3'
miRNA:   3'- -CGCCa---CUGGUGGU-----GUG--GCCG--CUACgG- -5'
2938 3' -58.1 NC_001493.1 + 28739 0.66 0.817432
Target:  5'- uCGGUGGCCGucacgaguuccccacUCACGgUGGCGAgucGCUg -3'
miRNA:   3'- cGCCACUGGU---------------GGUGUgGCCGCUa--CGG- -5'
2938 3' -58.1 NC_001493.1 + 21240 0.66 0.814021
Target:  5'- ----aGGCCGCCGCcCCuGGUGAaGCCg -3'
miRNA:   3'- cgccaCUGGUGGUGuGG-CCGCUaCGG- -5'
2938 3' -58.1 NC_001493.1 + 21063 0.66 0.814021
Target:  5'- gGCGGguacgcucCCGCgGCACCGGgGAUcCCc -3'
miRNA:   3'- -CGCCacu-----GGUGgUGUGGCCgCUAcGG- -5'
2938 3' -58.1 NC_001493.1 + 53765 0.66 0.814021
Target:  5'- uCGGgaugGAUCu---CAUCGGCGGUGCCc -3'
miRNA:   3'- cGCCa---CUGGugguGUGGCCGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 494 0.66 0.805383
Target:  5'- aGCGGUccauucucggGAUUAUCGgGCCGGUGGUGaCa -3'
miRNA:   3'- -CGCCA----------CUGGUGGUgUGGCCGCUACgG- -5'
2938 3' -58.1 NC_001493.1 + 45779 0.66 0.805383
Target:  5'- cCGGUcuguGCCACgCGCuguUCGGUGAUGUCg -3'
miRNA:   3'- cGCCAc---UGGUG-GUGu--GGCCGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 116048 0.66 0.805383
Target:  5'- aGCGGUccauucucggGAUUAUCGgGCCGGUGGUGaCa -3'
miRNA:   3'- -CGCCA----------CUGGUGGUgUGGCCGCUACgG- -5'
2938 3' -58.1 NC_001493.1 + 106334 0.66 0.805383
Target:  5'- cGCGGagucGGCgGCCGCcaUGGCG-UGCCg -3'
miRNA:   3'- -CGCCa---CUGgUGGUGugGCCGCuACGG- -5'
2938 3' -58.1 NC_001493.1 + 34273 0.66 0.805383
Target:  5'- -gGGUGGguCCGCCAgcUGCCGGUucGGUGCg -3'
miRNA:   3'- cgCCACU--GGUGGU--GUGGCCG--CUACGg -5'
2938 3' -58.1 NC_001493.1 + 32267 0.66 0.805383
Target:  5'- aCGGUGACaAUCGCGgucCCGGCGA--CCa -3'
miRNA:   3'- cGCCACUGgUGGUGU---GGCCGCUacGG- -5'
2938 3' -58.1 NC_001493.1 + 108872 0.66 0.805383
Target:  5'- uGgGGUGugCgACCAuCGCCuGCGAUGgacCCg -3'
miRNA:   3'- -CgCCACugG-UGGU-GUGGcCGCUAC---GG- -5'
2938 3' -58.1 NC_001493.1 + 46681 0.66 0.805383
Target:  5'- cGCGGagagcgcaUGGCCACCAuCGCgGGCG-UGaUCu -3'
miRNA:   3'- -CGCC--------ACUGGUGGU-GUGgCCGCuAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.