miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2938 3' -58.1 NC_001493.1 + 10754 0.68 0.712046
Target:  5'- aGUGGaUGGCCGugUCguggGCAUCGGCGAUcgGCCa -3'
miRNA:   3'- -CGCC-ACUGGU--GG----UGUGGCCGCUA--CGG- -5'
2938 3' -58.1 NC_001493.1 + 90006 0.69 0.632203
Target:  5'- uGCGGUGuCCACC-CACUGGuUGAacgGUCc -3'
miRNA:   3'- -CGCCACuGGUGGuGUGGCC-GCUa--CGG- -5'
2938 3' -58.1 NC_001493.1 + 93325 0.69 0.632203
Target:  5'- -gGGUGACCGCgCGgACCGGUGc-GCUc -3'
miRNA:   3'- cgCCACUGGUG-GUgUGGCCGCuaCGG- -5'
2938 3' -58.1 NC_001493.1 + 63690 0.69 0.642267
Target:  5'- uGUGGUGGUCACCACGgugUCGuucGCGGUGUCg -3'
miRNA:   3'- -CGCCACUGGUGGUGU---GGC---CGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 55583 0.69 0.642267
Target:  5'- aUGGUGGCCuuCAuggcaucuauauCACCGGUGAUGUUc -3'
miRNA:   3'- cGCCACUGGugGU------------GUGGCCGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 13033 0.69 0.682365
Target:  5'- cGUGGUGACCucCCugguguuCGCCGG-GGUcGCCc -3'
miRNA:   3'- -CGCCACUGGu-GGu------GUGGCCgCUA-CGG- -5'
2938 3' -58.1 NC_001493.1 + 128588 0.69 0.682365
Target:  5'- cGUGGUGACCucCCugguguuCGCCGG-GGUcGCCc -3'
miRNA:   3'- -CGCCACUGGu-GGu------GUGGCCgCUA-CGG- -5'
2938 3' -58.1 NC_001493.1 + 99076 0.68 0.69231
Target:  5'- aCGGUGAaaaCCAUCACggACgCGcGCGAUGCg -3'
miRNA:   3'- cGCCACU---GGUGGUG--UG-GC-CGCUACGg -5'
2938 3' -58.1 NC_001493.1 + 63306 0.68 0.702207
Target:  5'- uGUGGUGGUCACCACGgugUCGGuCGAUcCCg -3'
miRNA:   3'- -CGCCACUGGUGGUGU---GGCC-GCUAcGG- -5'
2938 3' -58.1 NC_001493.1 + 58199 0.69 0.629183
Target:  5'- cCGGUGAUgACCACcCCgagucucacggucgGGCGAUGUa -3'
miRNA:   3'- cGCCACUGgUGGUGuGG--------------CCGCUACGg -5'
2938 3' -58.1 NC_001493.1 + 28045 0.7 0.602041
Target:  5'- uGCGGgugGAUCgACCGgACCGG-GcgGCCg -3'
miRNA:   3'- -CGCCa--CUGG-UGGUgUGGCCgCuaCGG- -5'
2938 3' -58.1 NC_001493.1 + 36884 0.7 0.592021
Target:  5'- gGCGGU--CCGCCcCGCCGGUG-UGCg -3'
miRNA:   3'- -CGCCAcuGGUGGuGUGGCCGCuACGg -5'
2938 3' -58.1 NC_001493.1 + 44520 0.74 0.402184
Target:  5'- cCGGUGcgacccagcgacuuACuCAUCGCACCGGCGAggUGCUg -3'
miRNA:   3'- cGCCAC--------------UG-GUGGUGUGGCCGCU--ACGG- -5'
2938 3' -58.1 NC_001493.1 + 63633 0.74 0.404714
Target:  5'- uGUGGUGGUCACCGCgguGCCGuucGCGGUGUCg -3'
miRNA:   3'- -CGCCACUGGUGGUG---UGGC---CGCUACGG- -5'
2938 3' -58.1 NC_001493.1 + 95584 0.73 0.413217
Target:  5'- cGCGGUGAuaUCAUCACACCgGGCGAg--- -3'
miRNA:   3'- -CGCCACU--GGUGGUGUGG-CCGCUacgg -5'
2938 3' -58.1 NC_001493.1 + 4545 0.72 0.484974
Target:  5'- uCGGUGACCcccgccgcuGCCGCGCCcccgGGUG-UGCCc -3'
miRNA:   3'- cGCCACUGG---------UGGUGUGG----CCGCuACGG- -5'
2938 3' -58.1 NC_001493.1 + 26149 0.72 0.484974
Target:  5'- cGCGGUG-CCGagaaC-CACCGGUGA-GCCu -3'
miRNA:   3'- -CGCCACuGGUg---GuGUGGCCGCUaCGG- -5'
2938 3' -58.1 NC_001493.1 + 120099 0.72 0.484974
Target:  5'- uCGGUGACCcccgccgcuGCCGCGCCcccgGGUG-UGCCc -3'
miRNA:   3'- cGCCACUGG---------UGGUGUGG----CCGCuACGG- -5'
2938 3' -58.1 NC_001493.1 + 94709 0.72 0.494366
Target:  5'- cCGGUGGgUGCCACGggGGCGAUGgCCg -3'
miRNA:   3'- cGCCACUgGUGGUGUggCCGCUAC-GG- -5'
2938 3' -58.1 NC_001493.1 + 87608 0.72 0.503841
Target:  5'- cCGGaagaGACCcguCCGCGCCGGUaGUGCCc -3'
miRNA:   3'- cGCCa---CUGGu--GGUGUGGCCGcUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.