miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2938 5' -49.7 NC_001493.1 + 46302 0.66 0.99805
Target:  5'- cCCAACGGCGCCGUucacgGAGUAaauguaaACCuCGu -3'
miRNA:   3'- -GGUUGCUGUGGCG-----CUUAUag-----UGGuGC- -5'
2938 5' -49.7 NC_001493.1 + 77083 0.66 0.99805
Target:  5'- aCAAgGGCACCGCcauuGAAaAUCAaauCCAUGa -3'
miRNA:   3'- gGUUgCUGUGGCG----CUUaUAGU---GGUGC- -5'
2938 5' -49.7 NC_001493.1 + 22419 0.66 0.99805
Target:  5'- aCCGGCGGC-CCGCGuGAUGagugcucgacccUCuCCAUGa -3'
miRNA:   3'- -GGUUGCUGuGGCGC-UUAU------------AGuGGUGC- -5'
2938 5' -49.7 NC_001493.1 + 44529 0.66 0.99805
Target:  5'- cCCAGCGacuuacucaucGCACCgGCGAGgugCugCAUGu -3'
miRNA:   3'- -GGUUGC-----------UGUGG-CGCUUauaGugGUGC- -5'
2938 5' -49.7 NC_001493.1 + 94196 0.66 0.997673
Target:  5'- uUCAACGGCACCGgacggGAAgucGUCAagcUCACGg -3'
miRNA:   3'- -GGUUGCUGUGGCg----CUUa--UAGU---GGUGC- -5'
2938 5' -49.7 NC_001493.1 + 16050 0.66 0.997673
Target:  5'- uCC-GCGAuCACCGCGcuGAUcccgGUCACCAg- -3'
miRNA:   3'- -GGuUGCU-GUGGCGC--UUA----UAGUGGUgc -5'
2938 5' -49.7 NC_001493.1 + 111135 0.66 0.997673
Target:  5'- -uGACGGCGUCGUGc--AUCACCAUGg -3'
miRNA:   3'- ggUUGCUGUGGCGCuuaUAGUGGUGC- -5'
2938 5' -49.7 NC_001493.1 + 131604 0.66 0.997673
Target:  5'- uCC-GCGAuCACCGCGcuGAUcccgGUCACCAg- -3'
miRNA:   3'- -GGuUGCU-GUGGCGC--UUA----UAGUGGUgc -5'
2938 5' -49.7 NC_001493.1 + 34933 0.66 0.997673
Target:  5'- aCCGAUGGaucCCGUGGuuUGUCACCAa- -3'
miRNA:   3'- -GGUUGCUgu-GGCGCUu-AUAGUGGUgc -5'
2938 5' -49.7 NC_001493.1 + 95997 0.66 0.997418
Target:  5'- gCCGAUugucuggcggucgcgGGCGCCGUGAgacucuuccucGUGUCGCuCACa -3'
miRNA:   3'- -GGUUG---------------CUGUGGCGCU-----------UAUAGUG-GUGc -5'
2938 5' -49.7 NC_001493.1 + 1935 0.66 0.997236
Target:  5'- aUCGACGugGCaaaGCuGAcGUAUCACCAg- -3'
miRNA:   3'- -GGUUGCugUGg--CG-CU-UAUAGUGGUgc -5'
2938 5' -49.7 NC_001493.1 + 117489 0.66 0.997236
Target:  5'- aUCGACGugGCaaaGCuGAcGUAUCACCAg- -3'
miRNA:   3'- -GGUUGCugUGg--CG-CU-UAUAGUGGUgc -5'
2938 5' -49.7 NC_001493.1 + 1319 0.66 0.997236
Target:  5'- -gAGCGuCuCCGCGGAagcgggCACCGCGg -3'
miRNA:   3'- ggUUGCuGuGGCGCUUaua---GUGGUGC- -5'
2938 5' -49.7 NC_001493.1 + 116873 0.66 0.997236
Target:  5'- -gAGCGuCuCCGCGGAagcgggCACCGCGg -3'
miRNA:   3'- ggUUGCuGuGGCGCUUaua---GUGGUGC- -5'
2938 5' -49.7 NC_001493.1 + 113904 0.66 0.997236
Target:  5'- cCCGACGGCAguccCCGCGc--AUCuCCugGc -3'
miRNA:   3'- -GGUUGCUGU----GGCGCuuaUAGuGGugC- -5'
2938 5' -49.7 NC_001493.1 + 13886 0.66 0.996733
Target:  5'- -aGACgGGCuCCGCGAaagucGUGUCAacCCACGa -3'
miRNA:   3'- ggUUG-CUGuGGCGCU-----UAUAGU--GGUGC- -5'
2938 5' -49.7 NC_001493.1 + 80772 0.66 0.996733
Target:  5'- gUCAugGcCGCCGCGGucAUCAUC-CGu -3'
miRNA:   3'- -GGUugCuGUGGCGCUuaUAGUGGuGC- -5'
2938 5' -49.7 NC_001493.1 + 35600 0.66 0.996733
Target:  5'- aCCAGCu-CA-CGCGAGacgugGUCACCGCa -3'
miRNA:   3'- -GGUUGcuGUgGCGCUUa----UAGUGGUGc -5'
2938 5' -49.7 NC_001493.1 + 129440 0.66 0.996733
Target:  5'- -aGACgGGCuCCGCGAaagucGUGUCAacCCACGa -3'
miRNA:   3'- ggUUG-CUGuGGCGCU-----UAUAGU--GGUGC- -5'
2938 5' -49.7 NC_001493.1 + 97988 0.66 0.996733
Target:  5'- aUCAACgGGCAgcugUCGCGAAUGUaCACCGa- -3'
miRNA:   3'- -GGUUG-CUGU----GGCGCUUAUA-GUGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.