miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 104460 0.66 0.553152
Target:  5'- -cGcCGUGGGCUUCgucggggcggacauGGCgCACGUGcCCCg -3'
miRNA:   3'- ccC-GCACCCGGAG--------------CCG-GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 65373 0.66 0.55127
Target:  5'- aGGGCGUgcaccacgugccccGGGCgCgccgugagcgagCGGCggUACGCGUCCa -3'
miRNA:   3'- -CCCGCA--------------CCCG-Ga-----------GCCG--GUGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 133663 0.66 0.546574
Target:  5'- aGGCGcu-GCCggcgCGGCgGCGCGcCCCc -3'
miRNA:   3'- cCCGCaccCGGa---GCCGgUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 73967 0.66 0.546574
Target:  5'- -cGCGU-GGCCaccgUGGCCAugccCGCGUCCg -3'
miRNA:   3'- ccCGCAcCCGGa---GCCGGU----GCGCAGGg -5'
29380 3' -64 NC_006151.1 + 126028 0.66 0.546574
Target:  5'- -----aGGGCCUCGGCgACGUGggcgCCg -3'
miRNA:   3'- cccgcaCCCGGAGCCGgUGCGCa---GGg -5'
29380 3' -64 NC_006151.1 + 57157 0.66 0.546574
Target:  5'- gGGGCGaGGGCgUCccCCgGCGCGgCCCa -3'
miRNA:   3'- -CCCGCaCCCGgAGccGG-UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 58422 0.66 0.546574
Target:  5'- uGGGCGUGcGgcagccacGCCUCGGUgGCGUG-CgCg -3'
miRNA:   3'- -CCCGCAC-C--------CGGAGCCGgUGCGCaGgG- -5'
29380 3' -64 NC_006151.1 + 117787 0.66 0.546574
Target:  5'- cGGGCGgGGcGCCacgccCGGCgGgGCGgggCCCc -3'
miRNA:   3'- -CCCGCaCC-CGGa----GCCGgUgCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 56541 0.66 0.546574
Target:  5'- cGGGUucGGGCCccugcUCGGCCugccgggcgACGCGccgccgCCCg -3'
miRNA:   3'- -CCCGcaCCCGG-----AGCCGG---------UGCGCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 103826 0.67 0.538153
Target:  5'- uGGCG-GcGGCCguggagaugcucgggCGGCUGCGCGcgcagCCCg -3'
miRNA:   3'- cCCGCaC-CCGGa--------------GCCGGUGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 18492 0.67 0.53722
Target:  5'- -uGCGUGGGCaggcugguguacacCGGCgagagcaUGCGCGUCCCc -3'
miRNA:   3'- ccCGCACCCGga------------GCCG-------GUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 31729 0.67 0.53722
Target:  5'- gGGGCGUGGagaggcGCC-CGcGCCggggACGCG-CCUg -3'
miRNA:   3'- -CCCGCACC------CGGaGC-CGG----UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 54604 0.67 0.53722
Target:  5'- cGGCGUGGuCCcggUGcGCCggGCGCGcCCCg -3'
miRNA:   3'- cCCGCACCcGGa--GC-CGG--UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 77102 0.67 0.53722
Target:  5'- -aGCGcGGGCgCggCGGgCGCGCG-CCCa -3'
miRNA:   3'- ccCGCaCCCG-Ga-GCCgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 113108 0.67 0.53722
Target:  5'- gGGGCG-GGGCCgcggacgCGgacGCCGC-CGggCCCg -3'
miRNA:   3'- -CCCGCaCCCGGa------GC---CGGUGcGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 123929 0.67 0.53722
Target:  5'- cGGGCc---GCCUCGGCCuCGCcgacgCCCg -3'
miRNA:   3'- -CCCGcaccCGGAGCCGGuGCGca---GGG- -5'
29380 3' -64 NC_006151.1 + 130962 0.67 0.53722
Target:  5'- cGGGCGcggGGGCCgguacccCGGCCGCcCGggCUg -3'
miRNA:   3'- -CCCGCa--CCCGGa------GCCGGUGcGCa-GGg -5'
29380 3' -64 NC_006151.1 + 139093 0.67 0.53722
Target:  5'- gGGGCGcgcaUGGcGCuguucacgaccCUCGGCgucaCGCGCGcCCCg -3'
miRNA:   3'- -CCCGC----ACC-CG-----------GAGCCG----GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 138530 0.67 0.531635
Target:  5'- gGGGUGaUGGGCgCguacgcCGGCCuggGCGCGUacuacgcgaccgucgCCCg -3'
miRNA:   3'- -CCCGC-ACCCG-Ga-----GCCGG---UGCGCA---------------GGG- -5'
29380 3' -64 NC_006151.1 + 2205 0.67 0.531635
Target:  5'- cGGGCcgGUGGGUCUccacggcgcccccggCGGCgGCGCGgacgcuggUCUCg -3'
miRNA:   3'- -CCCG--CACCCGGA---------------GCCGgUGCGC--------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.