Results 61 - 80 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 3' | -53.9 | NC_006151.1 | + | 108482 | 0.67 | 0.943476 |
Target: 5'- aGCG-GGGCGCGcAGAcaAGUGCgaacaCACGg -3' miRNA: 3'- -CGCaCCUGUGCuUCU--UCGCGag---GUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 104365 | 0.67 | 0.943476 |
Target: 5'- gGCGccGACACGGAGc--CGCUCuCGCGg -3' miRNA: 3'- -CGCacCUGUGCUUCuucGCGAG-GUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 102946 | 0.67 | 0.943476 |
Target: 5'- cGCGcUGGACGCGgcGcccGcCGC-CCACGa -3' miRNA: 3'- -CGC-ACCUGUGCuuCuu-C-GCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 64541 | 0.67 | 0.943476 |
Target: 5'- cGCGUcGGGgGCGgcGAGGCcguggcgcgccaGCUCgACGa -3' miRNA: 3'- -CGCA-CCUgUGCuuCUUCG------------CGAGgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 46085 | 0.67 | 0.938793 |
Target: 5'- gGgGUGaaGACuauacCGAGGAGGUGCgCCACGa -3' miRNA: 3'- -CgCAC--CUGu----GCUUCUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 123036 | 0.67 | 0.938793 |
Target: 5'- gGCGUGGGCGgaccUGccGGccgcGGCGCUgCGCGa -3' miRNA: 3'- -CGCACCUGU----GCuuCU----UCGCGAgGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 57196 | 0.67 | 0.943476 |
Target: 5'- uCGUGG-CGCGAGGcgaAGGCccGCUCgACGa -3' miRNA: 3'- cGCACCuGUGCUUC---UUCG--CGAGgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 120377 | 0.67 | 0.943476 |
Target: 5'- aGCGcccGGACACGGccguGGAcGUGCUCaACGg -3' miRNA: 3'- -CGCa--CCUGUGCU----UCUuCGCGAGgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 7159 | 0.67 | 0.943476 |
Target: 5'- cGCGcGGGCGCGAGGc-GCauGCUCgGCa -3' miRNA: 3'- -CGCaCCUGUGCUUCuuCG--CGAGgUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 82277 | 0.68 | 0.911734 |
Target: 5'- aGCGUcacguugaagacGGcCGCGggGcAGCGCgccUCCGCGu -3' miRNA: 3'- -CGCA------------CCuGUGCuuCuUCGCG---AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 139540 | 0.68 | 0.911734 |
Target: 5'- gGCGUccaggucgGGGaGCGAGGAgcGGCGCccggUCCGCGa -3' miRNA: 3'- -CGCA--------CCUgUGCUUCU--UCGCG----AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 54919 | 0.68 | 0.911734 |
Target: 5'- cGCGUGcACgGCGAGGugcuGGCGUgCCACGc -3' miRNA: 3'- -CGCACcUG-UGCUUCu---UCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 89076 | 0.68 | 0.911734 |
Target: 5'- cCGUGGACGCGcguccGGuuGuUGUUCCGCGg -3' miRNA: 3'- cGCACCUGUGCu----UCuuC-GCGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 118432 | 0.68 | 0.914123 |
Target: 5'- ---cGGGCGCGGAGGuguGCGCgcggcucggccuggCCGCGg -3' miRNA: 3'- cgcaCCUGUGCUUCUu--CGCGa-------------GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 111828 | 0.68 | 0.914123 |
Target: 5'- cCGUGGAcCugGAAGAcgcaccgcgucggggGGCGCUCgGgGu -3' miRNA: 3'- cGCACCU-GugCUUCU---------------UCGCGAGgUgC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 102446 | 0.68 | 0.917633 |
Target: 5'- gGCGcUGGACGCGcucGAGuccgGGgGCUCCuACGc -3' miRNA: 3'- -CGC-ACCUGUGC---UUCu---UCgCGAGG-UGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 10909 | 0.68 | 0.917633 |
Target: 5'- gGCGcGGAC-CGggGucGgGC-CCACGg -3' miRNA: 3'- -CGCaCCUGuGCuuCuuCgCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 64881 | 0.68 | 0.917633 |
Target: 5'- gGCGggagcagGGcCGCGAAGAgcacgcagcGGCGCgcgagcaccUCCACGg -3' miRNA: 3'- -CGCa------CCuGUGCUUCU---------UCGCG---------AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 77926 | 0.68 | 0.917633 |
Target: 5'- cCGUGGugGUGAAGGgcgGGCGCgcggcccCCACGc -3' miRNA: 3'- cGCACCugUGCUUCU---UCGCGa------GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 4315 | 0.68 | 0.911734 |
Target: 5'- cGCG-GGGCACGcGGccGgGCUgCGCGg -3' miRNA: 3'- -CGCaCCUGUGCuUCuuCgCGAgGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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