miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 118574 0.71 0.759101
Target:  5'- ---cGGGCACGAGGcguGGCGCgugCCGCu -3'
miRNA:   3'- cgcaCCUGUGCUUCu--UCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 7055 0.71 0.759101
Target:  5'- --aUGGGCGCGcGGAGGCGuCUcCCGCGc -3'
miRNA:   3'- cgcACCUGUGCuUCUUCGC-GA-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 38208 0.71 0.796618
Target:  5'- aGCGUGGACGgGGccc-GCGC-CCGCGa -3'
miRNA:   3'- -CGCACCUGUgCUucuuCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 63882 0.71 0.778126
Target:  5'- aGCGUGucCGCGucGggGCGCUCgaGCa -3'
miRNA:   3'- -CGCACcuGUGCuuCuuCGCGAGg-UGc -5'
29381 3' -53.9 NC_006151.1 + 114947 0.71 0.787443
Target:  5'- gGgGUGGGCGCGAugaugacguAGGAcacGCGCUCCuuGa -3'
miRNA:   3'- -CgCACCUGUGCU---------UCUU---CGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 53316 0.71 0.759101
Target:  5'- uGCGUGGGCgagcccacacagACGAGcacGggGCGCgcgcgcgCCGCGu -3'
miRNA:   3'- -CGCACCUG------------UGCUU---CuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 53986 0.71 0.778126
Target:  5'- cGCG-GGcguCGCGGcgagcucccGGAcGCGCUCCACGa -3'
miRNA:   3'- -CGCaCCu--GUGCU---------UCUuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 77102 0.7 0.805641
Target:  5'- aGCGcGGGCGCGgcGGGcGCGCgcCCACa -3'
miRNA:   3'- -CGCaCCUGUGCuuCUU-CGCGa-GGUGc -5'
29381 3' -53.9 NC_006151.1 + 103981 0.7 0.822336
Target:  5'- gGCGagcUGGAgGCGGccguggcggccguGGAGGCGCgCCGCGc -3'
miRNA:   3'- -CGC---ACCUgUGCU-------------UCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 23028 0.7 0.823197
Target:  5'- -gGUGGAggcgGCGAAGAAGCGggcggCCGCGg -3'
miRNA:   3'- cgCACCUg---UGCUUCUUCGCga---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 32598 0.7 0.823197
Target:  5'- aGCG-GGAa--GggGAAGCGCggggcgCCGCGc -3'
miRNA:   3'- -CGCaCCUgugCuuCUUCGCGa-----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 99555 0.7 0.831714
Target:  5'- aCGUGGGCGCGgcGcgcgcGGCGCUgCUGCGc -3'
miRNA:   3'- cGCACCUGUGCuuCu----UCGCGA-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 57836 0.7 0.814503
Target:  5'- cGCGgaGGGCGCac--GGGUGCUCCACGg -3'
miRNA:   3'- -CGCa-CCUGUGcuucUUCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 56989 0.7 0.831714
Target:  5'- aCGaGGGCgGCGAAGAuGgGCUCCAUGu -3'
miRNA:   3'- cGCaCCUG-UGCUUCUuCgCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 78662 0.7 0.831714
Target:  5'- gGCGgccgGGGCGCGGgugcuGGAcGgGCUCUACGc -3'
miRNA:   3'- -CGCa---CCUGUGCU-----UCUuCgCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 122421 0.7 0.839221
Target:  5'- cCGUGGACGCcgccgaggcccggGAggcGGAGGCGgCgUCCACGg -3'
miRNA:   3'- cGCACCUGUG-------------CU---UCUUCGC-G-AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 74114 0.7 0.840045
Target:  5'- aGCGaguUGGGCACGAGGuuGCGCgggugCaGCGg -3'
miRNA:   3'- -CGC---ACCUGUGCUUCuuCGCGa----GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 29446 0.7 0.840045
Target:  5'- gGCGgggagaggGGACGCGGAGGgagcgGGCGCgCCGgGa -3'
miRNA:   3'- -CGCa-------CCUGUGCUUCU-----UCGCGaGGUgC- -5'
29381 3' -53.9 NC_006151.1 + 52602 0.7 0.831714
Target:  5'- cGCGUGGACgaagGCGucGucGCGCaggacggCCGCGa -3'
miRNA:   3'- -CGCACCUG----UGCuuCuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 100361 0.69 0.885753
Target:  5'- uCGUGGACGCcgu-GGGCGCcuUCCGCGc -3'
miRNA:   3'- cGCACCUGUGcuucUUCGCG--AGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.