miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 10224 0.69 0.871375
Target:  5'- gGCGgcugcGGACGCGGAGggGgGCgaggggaCACa -3'
miRNA:   3'- -CGCa----CCUGUGCUUCuuCgCGag-----GUGc -5'
29381 3' -53.9 NC_006151.1 + 65496 0.69 0.856123
Target:  5'- cCGcGGACGcCGgcGGAGCGCgccuccUCCGCGg -3'
miRNA:   3'- cGCaCCUGU-GCuuCUUCGCG------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 130076 0.69 0.878676
Target:  5'- aGCGUgaacauGGGCGCGAgcAGcucGCGCUCCuCGg -3'
miRNA:   3'- -CGCA------CCUGUGCU--UCuu-CGCGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 100361 0.69 0.885753
Target:  5'- uCGUGGACGCcgu-GGGCGCcuUCCGCGc -3'
miRNA:   3'- cGCACCUGUGcuucUUCGCG--AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 77507 0.69 0.863856
Target:  5'- aCGUGcGCACGGAGcuGGCGCgccucggCCGCGc -3'
miRNA:   3'- cGCACcUGUGCUUCu-UCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 87312 0.69 0.885753
Target:  5'- cCGUGGcGCACGccGugccGGCGCUCC-CGg -3'
miRNA:   3'- cGCACC-UGUGCuuCu---UCGCGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 129796 0.69 0.863856
Target:  5'- gGCGUGGgcccGCAUGAGGcccguGAGCGCggagCgCGCGg -3'
miRNA:   3'- -CGCACC----UGUGCUUC-----UUCGCGa---G-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 64771 0.69 0.885753
Target:  5'- cGCGgGGGCugGuugccGggGCGCgagcuggCCACGc -3'
miRNA:   3'- -CGCaCCUGugCuu---CuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 122374 0.69 0.871375
Target:  5'- ---cGGGCuCGAcGAGGCGCgCCGCGg -3'
miRNA:   3'- cgcaCCUGuGCUuCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 118940 0.69 0.871375
Target:  5'- aGCGccGACGCGGcgcugucgcuGGAGGCGCUCguCGc -3'
miRNA:   3'- -CGCacCUGUGCU----------UCUUCGCGAGguGC- -5'
29381 3' -53.9 NC_006151.1 + 90826 0.69 0.871375
Target:  5'- -gGUGGuCACGcugaacAGggGCGCcugCCGCGg -3'
miRNA:   3'- cgCACCuGUGCu-----UCuuCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 124055 0.69 0.856123
Target:  5'- gGCGaccUGGACGCGcGGAcggccguGCGCgcggCCGCGa -3'
miRNA:   3'- -CGC---ACCUGUGCuUCUu------CGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 19258 0.69 0.856123
Target:  5'- cGCGUGGAaGCGggGcucguGGCGCgcggggcCCACc -3'
miRNA:   3'- -CGCACCUgUGCuuCu----UCGCGa------GGUGc -5'
29381 3' -53.9 NC_006151.1 + 58448 0.69 0.848184
Target:  5'- gGCGUGcGcgcGCGCGgcGucGCGgUCCACGa -3'
miRNA:   3'- -CGCAC-C---UGUGCuuCuuCGCgAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 20883 0.69 0.848184
Target:  5'- cGCGcuUGGGguCGAGGcgcAGCaGCUCCACGc -3'
miRNA:   3'- -CGC--ACCUguGCUUCu--UCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82175 0.69 0.871375
Target:  5'- aGCGccggGGGCGCGAucauGCGCaUCCGCu -3'
miRNA:   3'- -CGCa---CCUGUGCUucuuCGCG-AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 40571 0.69 0.871375
Target:  5'- gGCGgcGGcCGCGgcGGAGgGCUCgGCGg -3'
miRNA:   3'- -CGCa-CCuGUGCuuCUUCgCGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 107263 0.69 0.881534
Target:  5'- cGCGUGGACccggccaccuCGGAGGAGCuguacggccggccgaGCUuCCGCa -3'
miRNA:   3'- -CGCACCUGu---------GCUUCUUCG---------------CGA-GGUGc -5'
29381 3' -53.9 NC_006151.1 + 75176 0.68 0.892601
Target:  5'- ---cGGGCcacuccuCGAGGAAGCGCUgCAUGa -3'
miRNA:   3'- cgcaCCUGu------GCUUCUUCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 104846 0.68 0.892601
Target:  5'- gGCGgaggcGGACcaggccgcgGCGAcGGAGCGCgCCACGc -3'
miRNA:   3'- -CGCa----CCUG---------UGCUuCUUCGCGaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.