Results 81 - 100 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 3' | -53.9 | NC_006151.1 | + | 120715 | 0.68 | 0.899216 |
Target: 5'- aCGgGGAuCACGAugcagucGAAGCGC-CCGCGg -3' miRNA: 3'- cGCaCCU-GUGCUu------CUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 115607 | 0.68 | 0.899216 |
Target: 5'- cGCGUGGcccagcgcgucuGCACGuAGucGCGCguggCCACc -3' miRNA: 3'- -CGCACC------------UGUGCuUCuuCGCGa---GGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 141742 | 0.68 | 0.899216 |
Target: 5'- gGCGgagGGGCGCGggGc-GCGCgCCcCGg -3' miRNA: 3'- -CGCa--CCUGUGCuuCuuCGCGaGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 100243 | 0.68 | 0.899216 |
Target: 5'- cGCGUGGugGCGcucGAGCGCcucUUCACc -3' miRNA: 3'- -CGCACCugUGCuucUUCGCG---AGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 99503 | 0.68 | 0.899216 |
Target: 5'- gGCGUGGAgCACGu---GGUGCgCCACu -3' miRNA: 3'- -CGCACCU-GUGCuucuUCGCGaGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 104846 | 0.68 | 0.892601 |
Target: 5'- gGCGgaggcGGACcaggccgcgGCGAcGGAGCGCgCCACGc -3' miRNA: 3'- -CGCa----CCUG---------UGCUuCUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 75176 | 0.68 | 0.892601 |
Target: 5'- ---cGGGCcacuccuCGAGGAAGCGCUgCAUGa -3' miRNA: 3'- cgcaCCUGu------GCUUCUUCGCGAgGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 84408 | 0.68 | 0.905595 |
Target: 5'- cGgGUGGGCGCGguGAuaaggcGGCGCgCgGCGg -3' miRNA: 3'- -CgCACCUGUGCuuCU------UCGCGaGgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 27307 | 0.68 | 0.905595 |
Target: 5'- gGCGUGGGgGuCGAggcgggggacgGGggGCuGCUCCcCGg -3' miRNA: 3'- -CGCACCUgU-GCU-----------UCuuCG-CGAGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 118432 | 0.68 | 0.914123 |
Target: 5'- ---cGGGCGCGGAGGuguGCGCgcggcucggccuggCCGCGg -3' miRNA: 3'- cgcaCCUGUGCUUCUu--CGCGa-------------GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 54919 | 0.68 | 0.911734 |
Target: 5'- cGCGUGcACgGCGAGGugcuGGCGUgCCACGc -3' miRNA: 3'- -CGCACcUG-UGCUUCu---UCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 139540 | 0.68 | 0.911734 |
Target: 5'- gGCGUccaggucgGGGaGCGAGGAgcGGCGCccggUCCGCGa -3' miRNA: 3'- -CGCA--------CCUgUGCUUCU--UCGCG----AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 82277 | 0.68 | 0.911734 |
Target: 5'- aGCGUcacguugaagacGGcCGCGggGcAGCGCgccUCCGCGu -3' miRNA: 3'- -CGCA------------CCuGUGCuuCuUCGCG---AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 4315 | 0.68 | 0.911734 |
Target: 5'- cGCG-GGGCACGcGGccGgGCUgCGCGg -3' miRNA: 3'- -CGCaCCUGUGCuUCuuCgCGAgGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 22825 | 0.68 | 0.911734 |
Target: 5'- uGCaggGGGCGCGAGGcGAGCGCgcugcCCAgGa -3' miRNA: 3'- -CGca-CCUGUGCUUC-UUCGCGa----GGUgC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 82639 | 0.68 | 0.911131 |
Target: 5'- cGCG-GGACcccccugcgGCGAGGGcggcccacccugcGGCGCgCCGCGg -3' miRNA: 3'- -CGCaCCUG---------UGCUUCU-------------UCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 120049 | 0.68 | 0.911131 |
Target: 5'- gGCGUgcuccacGGGCAgcccgUGGAGggGCGCaacuUCCGCa -3' miRNA: 3'- -CGCA-------CCUGU-----GCUUCuuCGCG----AGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 66569 | 0.68 | 0.908079 |
Target: 5'- cCGUGGACccggcgcucgcgcgcGCGGccGAGGCGCUCgACu -3' miRNA: 3'- cGCACCUG---------------UGCUu-CUUCGCGAGgUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 118773 | 0.68 | 0.905595 |
Target: 5'- uGCGgaaccUGGACGCGguGgcGCGCggCGCGg -3' miRNA: 3'- -CGC-----ACCUGUGCuuCuuCGCGagGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 85486 | 0.68 | 0.905595 |
Target: 5'- gGCGaGGACGCGccGcugcuGCGCgCCACGg -3' miRNA: 3'- -CGCaCCUGUGCuuCuu---CGCGaGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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