miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 66569 0.68 0.908079
Target:  5'- cCGUGGACccggcgcucgcgcgcGCGGccGAGGCGCUCgACu -3'
miRNA:   3'- cGCACCUG---------------UGCUu-CUUCGCGAGgUGc -5'
29381 3' -53.9 NC_006151.1 + 118773 0.68 0.905595
Target:  5'- uGCGgaaccUGGACGCGguGgcGCGCggCGCGg -3'
miRNA:   3'- -CGC-----ACCUGUGCuuCuuCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 85486 0.68 0.905595
Target:  5'- gGCGaGGACGCGccGcugcuGCGCgCCACGg -3'
miRNA:   3'- -CGCaCCUGUGCuuCuu---CGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 27307 0.68 0.905595
Target:  5'- gGCGUGGGgGuCGAggcgggggacgGGggGCuGCUCCcCGg -3'
miRNA:   3'- -CGCACCUgU-GCU-----------UCuuCG-CGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 84408 0.68 0.905595
Target:  5'- cGgGUGGGCGCGguGAuaaggcGGCGCgCgGCGg -3'
miRNA:   3'- -CgCACCUGUGCuuCU------UCGCGaGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 89076 0.68 0.911734
Target:  5'- cCGUGGACGCGcguccGGuuGuUGUUCCGCGg -3'
miRNA:   3'- cGCACCUGUGCu----UCuuC-GCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 103740 0.68 0.904967
Target:  5'- cGC-UGG-CGCGGcagugcgAGGAGCGCgCCGCGg -3'
miRNA:   3'- -CGcACCuGUGCU-------UCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 123036 0.67 0.938793
Target:  5'- gGCGUGGGCGgaccUGccGGccgcGGCGCUgCGCGa -3'
miRNA:   3'- -CGCACCUGU----GCuuCU----UCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 57196 0.67 0.943476
Target:  5'- uCGUGG-CGCGAGGcgaAGGCccGCUCgACGa -3'
miRNA:   3'- cGCACCuGUGCUUC---UUCG--CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 120377 0.67 0.943476
Target:  5'- aGCGcccGGACACGGccguGGAcGUGCUCaACGg -3'
miRNA:   3'- -CGCa--CCUGUGCU----UCUuCGCGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 7159 0.67 0.943476
Target:  5'- cGCGcGGGCGCGAGGc-GCauGCUCgGCa -3'
miRNA:   3'- -CGCaCCUGUGCUUCuuCG--CGAGgUGc -5'
29381 3' -53.9 NC_006151.1 + 64541 0.67 0.943476
Target:  5'- cGCGUcGGGgGCGgcGAGGCcguggcgcgccaGCUCgACGa -3'
miRNA:   3'- -CGCA-CCUgUGCuuCUUCG------------CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 46085 0.67 0.938793
Target:  5'- gGgGUGaaGACuauacCGAGGAGGUGCgCCACGa -3'
miRNA:   3'- -CgCAC--CUGu----GCUUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 95558 0.67 0.935867
Target:  5'- --aUGGGCAgGGAcucgacgccgaggccGAGGCGCUCCAgGc -3'
miRNA:   3'- cgcACCUGUgCUU---------------CUUCGCGAGGUgC- -5'
29381 3' -53.9 NC_006151.1 + 62505 0.67 0.935867
Target:  5'- gGCGcGGACgACGGcccggcgguaccugcAGAAGCGcCUgCACGg -3'
miRNA:   3'- -CGCaCCUG-UGCU---------------UCUUCGC-GAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 115168 0.67 0.933868
Target:  5'- gGCGaagccGCGCGGcaGGggGCGCUCCAg- -3'
miRNA:   3'- -CGCacc--UGUGCU--UCuuCGCGAGGUgc -5'
29381 3' -53.9 NC_006151.1 + 64232 0.67 0.933868
Target:  5'- gGCGUacaGGGcCGCGAcGGcGGCGCgggCCACGc -3'
miRNA:   3'- -CGCA---CCU-GUGCU-UCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 30836 0.67 0.933868
Target:  5'- uGCGUGGGCggagaggaGCGAGGAGGacugGCggCgGCGg -3'
miRNA:   3'- -CGCACCUG--------UGCUUCUUCg---CGa-GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 29404 0.67 0.933868
Target:  5'- gGCG-GGACcgcGCGGAGAAG-GCUcgguguggCCGCGg -3'
miRNA:   3'- -CGCaCCUG---UGCUUCUUCgCGA--------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 113177 0.67 0.933868
Target:  5'- aCGUGGcCACGggGGAGCcCaaCGCGc -3'
miRNA:   3'- cGCACCuGUGCuuCUUCGcGagGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.