miRNA display CGI


Results 121 - 140 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 95558 0.67 0.935867
Target:  5'- --aUGGGCAgGGAcucgacgccgaggccGAGGCGCUCCAgGc -3'
miRNA:   3'- cgcACCUGUgCUU---------------CUUCGCGAGGUgC- -5'
29381 3' -53.9 NC_006151.1 + 123036 0.67 0.938793
Target:  5'- gGCGUGGGCGgaccUGccGGccgcGGCGCUgCGCGa -3'
miRNA:   3'- -CGCACCUGU----GCuuCU----UCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64232 0.67 0.933868
Target:  5'- gGCGUacaGGGcCGCGAcGGcGGCGCgggCCACGc -3'
miRNA:   3'- -CGCA---CCU-GUGCU-UCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 115168 0.67 0.933868
Target:  5'- gGCGaagccGCGCGGcaGGggGCGCUCCAg- -3'
miRNA:   3'- -CGCacc--UGUGCU--UCuuCGCGAGGUgc -5'
29381 3' -53.9 NC_006151.1 + 96222 0.67 0.933868
Target:  5'- gGCGgcGGcCGCGgcGAGGCGCacaaagaacuggUCCAUGg -3'
miRNA:   3'- -CGCa-CCuGUGCuuCUUCGCG------------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 51165 0.67 0.923288
Target:  5'- cGCGgugaUGGugACGugcAGGGccCGCUCCACGa -3'
miRNA:   3'- -CGC----ACCugUGC---UUCUucGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82380 0.67 0.923288
Target:  5'- ---cGGGCGCGucGAAGgccacgaGCUCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCuuCUUCg------CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 91057 0.67 0.923288
Target:  5'- gGCGcuggaGGAgACGGAGAAGuCGaggCCGCGg -3'
miRNA:   3'- -CGCa----CCUgUGCUUCUUC-GCga-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 62505 0.67 0.935867
Target:  5'- gGCGcGGACgACGGcccggcgguaccugcAGAAGCGcCUgCACGg -3'
miRNA:   3'- -CGCaCCUG-UGCU---------------UCUUCGC-GAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 29404 0.67 0.933868
Target:  5'- gGCG-GGACcgcGCGGAGAAG-GCUcgguguggCCGCGg -3'
miRNA:   3'- -CGCaCCUG---UGCUUCUUCgCGA--------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 116115 0.67 0.933362
Target:  5'- gGCGcGGcgcuugucgggcaGCACGAAGccGCGCgagcCCGCGa -3'
miRNA:   3'- -CGCaCC-------------UGUGCUUCuuCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 84738 0.67 0.9287
Target:  5'- uCGUGGuGCuCGAGGAgacGGCGCgcgCCGCc -3'
miRNA:   3'- cGCACC-UGuGCUUCU---UCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 120787 0.67 0.923288
Target:  5'- ---cGGACGCGGccgacgcGGAGCGCgCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCUu------CUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 139641 0.66 0.963352
Target:  5'- gGCGccGGCGCGggGGucgcggcgGGCGCgCCGCc -3'
miRNA:   3'- -CGCacCUGUGCuuCU--------UCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 109754 0.66 0.959836
Target:  5'- cCGUGGcCGCcgccguuGGAGGCGC-CCGCa -3'
miRNA:   3'- cGCACCuGUGcu-----UCUUCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 73040 0.66 0.959836
Target:  5'- gGCgGUGG-CGCGGuGGggGUGCgcggggUCCGCGu -3'
miRNA:   3'- -CG-CACCuGUGCU-UCuuCGCG------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 45183 0.66 0.952124
Target:  5'- gGCGUgcccgccaccacGGACgGCGAcGggGUGCgCCGCGc -3'
miRNA:   3'- -CGCA------------CCUG-UGCUuCuuCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 77225 0.66 0.952124
Target:  5'- cGCGUGuGuGCGCcGGGAGGCGCcCCcCGg -3'
miRNA:   3'- -CGCAC-C-UGUGcUUCUUCGCGaGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 122958 0.66 0.952124
Target:  5'- cGCGggGGGCGCGGacgccggcgacGGggGCG-UCgGCGa -3'
miRNA:   3'- -CGCa-CCUGUGCU-----------UCuuCGCgAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 101223 0.66 0.952124
Target:  5'- gGCGUGGACggggcccgGCGggGGcauGUGCgCCAUc -3'
miRNA:   3'- -CGCACCUG--------UGCuuCUu--CGCGaGGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.