Results 61 - 80 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29381 | 3' | -53.9 | NC_006151.1 | + | 20883 | 0.69 | 0.848184 |
Target: 5'- cGCGcuUGGGguCGAGGcgcAGCaGCUCCACGc -3' miRNA: 3'- -CGC--ACCUguGCUUCu--UCG-CGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 97488 | 0.69 | 0.848184 |
Target: 5'- aCGUGGACGCGc---AGCGCcUCGCGg -3' miRNA: 3'- cGCACCUGUGCuucuUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 124055 | 0.69 | 0.856123 |
Target: 5'- gGCGaccUGGACGCGcGGAcggccguGCGCgcggCCGCGa -3' miRNA: 3'- -CGC---ACCUGUGCuUCUu------CGCGa---GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 65496 | 0.69 | 0.856123 |
Target: 5'- cCGcGGACGcCGgcGGAGCGCgccuccUCCGCGg -3' miRNA: 3'- cGCaCCUGU-GCuuCUUCGCG------AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 19258 | 0.69 | 0.856123 |
Target: 5'- cGCGUGGAaGCGggGcucguGGCGCgcggggcCCACc -3' miRNA: 3'- -CGCACCUgUGCuuCu----UCGCGa------GGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 77507 | 0.69 | 0.863856 |
Target: 5'- aCGUGcGCACGGAGcuGGCGCgccucggCCGCGc -3' miRNA: 3'- cGCACcUGUGCUUCu-UCGCGa------GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 129796 | 0.69 | 0.863856 |
Target: 5'- gGCGUGGgcccGCAUGAGGcccguGAGCGCggagCgCGCGg -3' miRNA: 3'- -CGCACC----UGUGCUUC-----UUCGCGa---G-GUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 118940 | 0.69 | 0.871375 |
Target: 5'- aGCGccGACGCGGcgcugucgcuGGAGGCGCUCguCGc -3' miRNA: 3'- -CGCacCUGUGCU----------UCUUCGCGAGguGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 40571 | 0.69 | 0.871375 |
Target: 5'- gGCGgcGGcCGCGgcGGAGgGCUCgGCGg -3' miRNA: 3'- -CGCa-CCuGUGCuuCUUCgCGAGgUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 10224 | 0.69 | 0.871375 |
Target: 5'- gGCGgcugcGGACGCGGAGggGgGCgaggggaCACa -3' miRNA: 3'- -CGCa----CCUGUGCUUCuuCgCGag-----GUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 82175 | 0.69 | 0.871375 |
Target: 5'- aGCGccggGGGCGCGAucauGCGCaUCCGCu -3' miRNA: 3'- -CGCa---CCUGUGCUucuuCGCG-AGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 122374 | 0.69 | 0.871375 |
Target: 5'- ---cGGGCuCGAcGAGGCGCgCCGCGg -3' miRNA: 3'- cgcaCCUGuGCUuCUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 90826 | 0.69 | 0.871375 |
Target: 5'- -gGUGGuCACGcugaacAGggGCGCcugCCGCGg -3' miRNA: 3'- cgCACCuGUGCu-----UCuuCGCGa--GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 130076 | 0.69 | 0.878676 |
Target: 5'- aGCGUgaacauGGGCGCGAgcAGcucGCGCUCCuCGg -3' miRNA: 3'- -CGCA------CCUGUGCU--UCuu-CGCGAGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 107263 | 0.69 | 0.881534 |
Target: 5'- cGCGUGGACccggccaccuCGGAGGAGCuguacggccggccgaGCUuCCGCa -3' miRNA: 3'- -CGCACCUGu---------GCUUCUUCG---------------CGA-GGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 64771 | 0.69 | 0.885753 |
Target: 5'- cGCGgGGGCugGuugccGggGCGCgagcuggCCACGc -3' miRNA: 3'- -CGCaCCUGugCuu---CuuCGCGa------GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 100361 | 0.69 | 0.885753 |
Target: 5'- uCGUGGACGCcgu-GGGCGCcuUCCGCGc -3' miRNA: 3'- cGCACCUGUGcuucUUCGCG--AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 87312 | 0.69 | 0.885753 |
Target: 5'- cCGUGGcGCACGccGugccGGCGCUCC-CGg -3' miRNA: 3'- cGCACC-UGUGCuuCu---UCGCGAGGuGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 75176 | 0.68 | 0.892601 |
Target: 5'- ---cGGGCcacuccuCGAGGAAGCGCUgCAUGa -3' miRNA: 3'- cgcaCCUGu------GCUUCUUCGCGAgGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 104846 | 0.68 | 0.892601 |
Target: 5'- gGCGgaggcGGACcaggccgcgGCGAcGGAGCGCgCCACGc -3' miRNA: 3'- -CGCa----CCUG---------UGCUuCUUCGCGaGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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