miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 100243 0.68 0.899216
Target:  5'- cGCGUGGugGCGcucGAGCGCcucUUCACc -3'
miRNA:   3'- -CGCACCugUGCuucUUCGCG---AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 141742 0.68 0.899216
Target:  5'- gGCGgagGGGCGCGggGc-GCGCgCCcCGg -3'
miRNA:   3'- -CGCa--CCUGUGCuuCuuCGCGaGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 115607 0.68 0.899216
Target:  5'- cGCGUGGcccagcgcgucuGCACGuAGucGCGCguggCCACc -3'
miRNA:   3'- -CGCACC------------UGUGCuUCuuCGCGa---GGUGc -5'
29381 3' -53.9 NC_006151.1 + 120715 0.68 0.899216
Target:  5'- aCGgGGAuCACGAugcagucGAAGCGC-CCGCGg -3'
miRNA:   3'- cGCaCCU-GUGCUu------CUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 99503 0.68 0.899216
Target:  5'- gGCGUGGAgCACGu---GGUGCgCCACu -3'
miRNA:   3'- -CGCACCU-GUGCuucuUCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 103740 0.68 0.904967
Target:  5'- cGC-UGG-CGCGGcagugcgAGGAGCGCgCCGCGg -3'
miRNA:   3'- -CGcACCuGUGCU-------UCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 23992 0.68 0.904967
Target:  5'- gGUGcGGAcCACGAGGAgcccgagGGCGaggaUCCACGu -3'
miRNA:   3'- -CGCaCCU-GUGCUUCU-------UCGCg---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 85486 0.68 0.905595
Target:  5'- gGCGaGGACGCGccGcugcuGCGCgCCACGg -3'
miRNA:   3'- -CGCaCCUGUGCuuCuu---CGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 27307 0.68 0.905595
Target:  5'- gGCGUGGGgGuCGAggcgggggacgGGggGCuGCUCCcCGg -3'
miRNA:   3'- -CGCACCUgU-GCU-----------UCuuCG-CGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 84408 0.68 0.905595
Target:  5'- cGgGUGGGCGCGguGAuaaggcGGCGCgCgGCGg -3'
miRNA:   3'- -CgCACCUGUGCuuCU------UCGCGaGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 118773 0.68 0.905595
Target:  5'- uGCGgaaccUGGACGCGguGgcGCGCggCGCGg -3'
miRNA:   3'- -CGC-----ACCUGUGCuuCuuCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 66569 0.68 0.908079
Target:  5'- cCGUGGACccggcgcucgcgcgcGCGGccGAGGCGCUCgACu -3'
miRNA:   3'- cGCACCUG---------------UGCUu-CUUCGCGAGgUGc -5'
29381 3' -53.9 NC_006151.1 + 82639 0.68 0.911131
Target:  5'- cGCG-GGACcccccugcgGCGAGGGcggcccacccugcGGCGCgCCGCGg -3'
miRNA:   3'- -CGCaCCUG---------UGCUUCU-------------UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 120049 0.68 0.911131
Target:  5'- gGCGUgcuccacGGGCAgcccgUGGAGggGCGCaacuUCCGCa -3'
miRNA:   3'- -CGCA-------CCUGU-----GCUUCuuCGCG----AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 54919 0.68 0.911734
Target:  5'- cGCGUGcACgGCGAGGugcuGGCGUgCCACGc -3'
miRNA:   3'- -CGCACcUG-UGCUUCu---UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 139540 0.68 0.911734
Target:  5'- gGCGUccaggucgGGGaGCGAGGAgcGGCGCccggUCCGCGa -3'
miRNA:   3'- -CGCA--------CCUgUGCUUCU--UCGCG----AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82277 0.68 0.911734
Target:  5'- aGCGUcacguugaagacGGcCGCGggGcAGCGCgccUCCGCGu -3'
miRNA:   3'- -CGCA------------CCuGUGCuuCuUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 4315 0.68 0.911734
Target:  5'- cGCG-GGGCACGcGGccGgGCUgCGCGg -3'
miRNA:   3'- -CGCaCCUGUGCuUCuuCgCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 22825 0.68 0.911734
Target:  5'- uGCaggGGGCGCGAGGcGAGCGCgcugcCCAgGa -3'
miRNA:   3'- -CGca-CCUGUGCUUC-UUCGCGa----GGUgC- -5'
29381 3' -53.9 NC_006151.1 + 89076 0.68 0.911734
Target:  5'- cCGUGGACGCGcguccGGuuGuUGUUCCGCGg -3'
miRNA:   3'- cGCACCUGUGCu----UCuuC-GCGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.