miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 78662 0.7 0.831714
Target:  5'- gGCGgccgGGGCGCGGgugcuGGAcGgGCUCUACGc -3'
miRNA:   3'- -CGCa---CCUGUGCU-----UCUuCgCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 81228 0.75 0.555816
Target:  5'- cGCGUGaACACGAAGcuGGCGCccCCGCGc -3'
miRNA:   3'- -CGCACcUGUGCUUCu-UCGCGa-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 81522 0.75 0.555816
Target:  5'- cGCGUgagcucggcGGcCGCGgcGgcGCGCUCCGCGg -3'
miRNA:   3'- -CGCA---------CCuGUGCuuCuuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82118 0.74 0.596684
Target:  5'- aGCGUGuACACGuGGAAGCGgC-CCGCGg -3'
miRNA:   3'- -CGCACcUGUGCuUCUUCGC-GaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82175 0.69 0.871375
Target:  5'- aGCGccggGGGCGCGAucauGCGCaUCCGCu -3'
miRNA:   3'- -CGCa---CCUGUGCUucuuCGCG-AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 82226 0.66 0.947919
Target:  5'- ---aGcGGCAgGAAGGAGCGCagCGCGa -3'
miRNA:   3'- cgcaC-CUGUgCUUCUUCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82277 0.68 0.911734
Target:  5'- aGCGUcacguugaagacGGcCGCGggGcAGCGCgccUCCGCGu -3'
miRNA:   3'- -CGCA------------CCuGUGCuuCuUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82380 0.67 0.923288
Target:  5'- ---cGGGCGCGucGAAGgccacgaGCUCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCuuCUUCg------CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82639 0.68 0.911131
Target:  5'- cGCG-GGACcccccugcgGCGAGGGcggcccacccugcGGCGCgCCGCGg -3'
miRNA:   3'- -CGCaCCUG---------UGCUUCU-------------UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 83221 0.74 0.58641
Target:  5'- cGCGUGGuCugGucGAAGCGCggCGCGc -3'
miRNA:   3'- -CGCACCuGugCuuCUUCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 84408 0.68 0.905595
Target:  5'- cGgGUGGGCGCGguGAuaaggcGGCGCgCgGCGg -3'
miRNA:   3'- -CgCACCUGUGCuuCU------UCGCGaGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 84738 0.67 0.9287
Target:  5'- uCGUGGuGCuCGAGGAgacGGCGCgcgCCGCc -3'
miRNA:   3'- cGCACC-UGuGCUUCU---UCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 85153 0.66 0.947919
Target:  5'- cGCGUGcGGCAgGggGccggcgccgcGGGCGCcgCCGCc -3'
miRNA:   3'- -CGCAC-CUGUgCuuC----------UUCGCGa-GGUGc -5'
29381 3' -53.9 NC_006151.1 + 85297 0.66 0.947919
Target:  5'- cGCGUGc-CGCGc--GAGCaGCUCCACGg -3'
miRNA:   3'- -CGCACcuGUGCuucUUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 85486 0.68 0.905595
Target:  5'- gGCGaGGACGCGccGcugcuGCGCgCCACGg -3'
miRNA:   3'- -CGCaCCUGUGCuuCuu---CGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 86634 0.82 0.243485
Target:  5'- cGCGUGuGGCacaugaGCGAGGAGGCGCUCaCGCGc -3'
miRNA:   3'- -CGCAC-CUG------UGCUUCUUCGCGAG-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 87312 0.69 0.885753
Target:  5'- cCGUGGcGCACGccGugccGGCGCUCC-CGg -3'
miRNA:   3'- cGCACC-UGUGCuuCu---UCGCGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 88126 0.66 0.952124
Target:  5'- aGCGggcGGGCGCuccgcacguuGAGcaggccGggGUGCUCCGCGc -3'
miRNA:   3'- -CGCa--CCUGUG----------CUU------CuuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 88310 0.72 0.709701
Target:  5'- gGCGcaGGGCcuCGGAGAAGCGCUgcgaggCCACGc -3'
miRNA:   3'- -CGCa-CCUGu-GCUUCUUCGCGA------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 88826 0.66 0.958738
Target:  5'- gGCGagGGAgGCGuuggcggagcugaaGAGGAGcCGCUcCCGCGg -3'
miRNA:   3'- -CGCa-CCUgUGC--------------UUCUUC-GCGA-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.