miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 88910 0.74 0.637971
Target:  5'- gGCGUcGGGCGaGcGGAAGCGC-CCGCGg -3'
miRNA:   3'- -CGCA-CCUGUgCuUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 89076 0.68 0.911734
Target:  5'- cCGUGGACGCGcguccGGuuGuUGUUCCGCGg -3'
miRNA:   3'- cGCACCUGUGCu----UCuuC-GCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 90654 0.66 0.956095
Target:  5'- gGCGUGuacauGCGCGggGcGGCGggCCGCu -3'
miRNA:   3'- -CGCACc----UGUGCuuCuUCGCgaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 90826 0.69 0.871375
Target:  5'- -gGUGGuCACGcugaacAGggGCGCcugCCGCGg -3'
miRNA:   3'- cgCACCuGUGCu-----UCuuCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 91057 0.67 0.923288
Target:  5'- gGCGcuggaGGAgACGGAGAAGuCGaggCCGCGg -3'
miRNA:   3'- -CGCa----CCUgUGCUUCUUC-GCga-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 94572 0.66 0.951714
Target:  5'- --aUGGACugGcugugguccacaaAGGggGCGCggUCCGCGc -3'
miRNA:   3'- cgcACCUGugC-------------UUCuuCGCG--AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 95026 0.66 0.960198
Target:  5'- cGCGUaGcGGCugugcucgaagccguCGAAGggGCGCaggCCGCGc -3'
miRNA:   3'- -CGCA-C-CUGu--------------GCUUCuuCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 95558 0.67 0.935867
Target:  5'- --aUGGGCAgGGAcucgacgccgaggccGAGGCGCUCCAgGc -3'
miRNA:   3'- cgcACCUGUgCUU---------------CUUCGCGAGGUgC- -5'
29381 3' -53.9 NC_006151.1 + 96222 0.67 0.933868
Target:  5'- gGCGgcGGcCGCGgcGAGGCGCacaaagaacuggUCCAUGg -3'
miRNA:   3'- -CGCa-CCuGUGCuuCUUCGCG------------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 96765 0.66 0.956095
Target:  5'- gGCGUGugcucGACACGggGAGGUGa---GCGg -3'
miRNA:   3'- -CGCAC-----CUGUGCuuCUUCGCgaggUGC- -5'
29381 3' -53.9 NC_006151.1 + 97488 0.69 0.848184
Target:  5'- aCGUGGACGCGc---AGCGCcUCGCGg -3'
miRNA:   3'- cGCACCUGUGCuucuUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 98000 0.73 0.648301
Target:  5'- gGCGUGGcCGCGuAGGcGGCGCcggccaggUCCGCGg -3'
miRNA:   3'- -CGCACCuGUGC-UUCuUCGCG--------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 99441 0.66 0.947919
Target:  5'- uCGcGGACACGcuGGAGCccCUCUACGg -3'
miRNA:   3'- cGCaCCUGUGCuuCUUCGc-GAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 99503 0.68 0.899216
Target:  5'- gGCGUGGAgCACGu---GGUGCgCCACu -3'
miRNA:   3'- -CGCACCU-GUGCuucuUCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 99555 0.7 0.831714
Target:  5'- aCGUGGGCGCGgcGcgcgcGGCGCUgCUGCGc -3'
miRNA:   3'- cGCACCUGUGCuuCu----UCGCGA-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 100243 0.68 0.899216
Target:  5'- cGCGUGGugGCGcucGAGCGCcucUUCACc -3'
miRNA:   3'- -CGCACCugUGCuucUUCGCG---AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 100361 0.69 0.885753
Target:  5'- uCGUGGACGCcgu-GGGCGCcuUCCGCGc -3'
miRNA:   3'- cGCACCUGUGcuucUUCGCG--AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 100441 0.73 0.679179
Target:  5'- gGCGUGauGGCGCaGAcgacGGAGGCGCUgCGCGa -3'
miRNA:   3'- -CGCAC--CUGUG-CU----UCUUCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 100699 0.66 0.966647
Target:  5'- cGCGagaccUGGACcgaggcgcGCGAGGAgcaGGCGCcgcCCGCGc -3'
miRNA:   3'- -CGC-----ACCUG--------UGCUUCU---UCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 101223 0.66 0.952124
Target:  5'- gGCGUGGACggggcccgGCGggGGcauGUGCgCCAUc -3'
miRNA:   3'- -CGCACCUG--------UGCuuCUu--CGCGaGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.