miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 102446 0.68 0.917633
Target:  5'- gGCGcUGGACGCGcucGAGuccgGGgGCUCCuACGc -3'
miRNA:   3'- -CGC-ACCUGUGC---UUCu---UCgCGAGG-UGC- -5'
29381 3' -53.9 NC_006151.1 + 102682 0.76 0.515801
Target:  5'- cCGUGGACGCGggGGcgcccGGCGCgggCgGCGc -3'
miRNA:   3'- cGCACCUGUGCuuCU-----UCGCGa--GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 102946 0.67 0.943476
Target:  5'- cGCGcUGGACGCGgcGcccGcCGC-CCACGa -3'
miRNA:   3'- -CGC-ACCUGUGCuuCuu-C-GCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 103651 0.66 0.956095
Target:  5'- gGCGgacgcGGACACGGcggAGAaggcGGCGCgcgCgGCGg -3'
miRNA:   3'- -CGCa----CCUGUGCU---UCU----UCGCGa--GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 103740 0.68 0.904967
Target:  5'- cGC-UGG-CGCGGcagugcgAGGAGCGCgCCGCGg -3'
miRNA:   3'- -CGcACCuGUGCU-------UCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 103981 0.7 0.822336
Target:  5'- gGCGagcUGGAgGCGGccguggcggccguGGAGGCGCgCCGCGc -3'
miRNA:   3'- -CGC---ACCUgUGCU-------------UCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 104365 0.67 0.943476
Target:  5'- gGCGccGACACGGAGc--CGCUCuCGCGg -3'
miRNA:   3'- -CGCacCUGUGCUUCuucGCGAG-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 104846 0.68 0.892601
Target:  5'- gGCGgaggcGGACcaggccgcgGCGAcGGAGCGCgCCACGc -3'
miRNA:   3'- -CGCa----CCUG---------UGCUuCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 104903 0.74 0.596684
Target:  5'- -gGUGGACGCGgcGGcGGCGCgcgaCCGCGa -3'
miRNA:   3'- cgCACCUGUGCuuCU-UCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 106351 0.74 0.637971
Target:  5'- cGCgGUGGACACGcuGGAcgcgGGCGCgcgcccgCCGCGg -3'
miRNA:   3'- -CG-CACCUGUGCu-UCU----UCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 107263 0.69 0.881534
Target:  5'- cGCGUGGACccggccaccuCGGAGGAGCuguacggccggccgaGCUuCCGCa -3'
miRNA:   3'- -CGCACCUGu---------GCUUCUUCG---------------CGA-GGUGc -5'
29381 3' -53.9 NC_006151.1 + 108482 0.67 0.943476
Target:  5'- aGCG-GGGCGCGcAGAcaAGUGCgaacaCACGg -3'
miRNA:   3'- -CGCaCCUGUGCuUCU--UCGCGag---GUGC- -5'
29381 3' -53.9 NC_006151.1 + 109754 0.66 0.959836
Target:  5'- cCGUGGcCGCcgccguuGGAGGCGC-CCGCa -3'
miRNA:   3'- cGCACCuGUGcu-----UCUUCGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 110867 0.78 0.404112
Target:  5'- cGC-UGGugGCGAacauGGGcuGGCGCUCCACGa -3'
miRNA:   3'- -CGcACCugUGCU----UCU--UCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 111760 0.72 0.719753
Target:  5'- aCGUGGGCccagcuGCGAuGAGGCGCagCACGu -3'
miRNA:   3'- cGCACCUG------UGCUuCUUCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 111828 0.68 0.914123
Target:  5'- cCGUGGAcCugGAAGAcgcaccgcgucggggGGCGCUCgGgGu -3'
miRNA:   3'- cGCACCU-GugCUUCU---------------UCGCGAGgUgC- -5'
29381 3' -53.9 NC_006151.1 + 113177 0.67 0.933868
Target:  5'- aCGUGGcCACGggGGAGCcCaaCGCGc -3'
miRNA:   3'- cGCACCuGUGCuuCUUCGcGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 114947 0.71 0.787443
Target:  5'- gGgGUGGGCGCGAugaugacguAGGAcacGCGCUCCuuGa -3'
miRNA:   3'- -CgCACCUGUGCU---------UCUU---CGCGAGGugC- -5'
29381 3' -53.9 NC_006151.1 + 115168 0.67 0.933868
Target:  5'- gGCGaagccGCGCGGcaGGggGCGCUCCAg- -3'
miRNA:   3'- -CGCacc--UGUGCU--UCuuCGCGAGGUgc -5'
29381 3' -53.9 NC_006151.1 + 115607 0.68 0.899216
Target:  5'- cGCGUGGcccagcgcgucuGCACGuAGucGCGCguggCCACc -3'
miRNA:   3'- -CGCACC------------UGUGCuUCuuCGCGa---GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.