miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 75430 0.77 0.439695
Target:  5'- gGCGUGGGCGCGAAGcugccGGCGUggCGCGc -3'
miRNA:   3'- -CGCACCUGUGCUUCu----UCGCGagGUGC- -5'
29381 3' -53.9 NC_006151.1 + 75176 0.68 0.892601
Target:  5'- ---cGGGCcacuccuCGAGGAAGCGCUgCAUGa -3'
miRNA:   3'- cgcaCCUGu------GCUUCUUCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 74114 0.7 0.840045
Target:  5'- aGCGaguUGGGCACGAGGuuGCGCgggugCaGCGg -3'
miRNA:   3'- -CGC---ACCUGUGCUUCuuCGCGa----GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 73040 0.66 0.959836
Target:  5'- gGCgGUGG-CGCGGuGGggGUGCgcggggUCCGCGu -3'
miRNA:   3'- -CG-CACCuGUGCU-UCuuCGCG------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 70168 0.66 0.947919
Target:  5'- aGCGcGGGCGCGAAGc-GCGUcaUCUGCu -3'
miRNA:   3'- -CGCaCCUGUGCUUCuuCGCG--AGGUGc -5'
29381 3' -53.9 NC_006151.1 + 70092 0.79 0.361475
Target:  5'- cGCGUGGGCgGCGAAG-GGCGCgagcgggUCCACGc -3'
miRNA:   3'- -CGCACCUG-UGCUUCuUCGCG-------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 68768 0.73 0.679179
Target:  5'- gGCgGUGGcgcGCGCGgcGAGGUGCgccgCCGCGg -3'
miRNA:   3'- -CG-CACC---UGUGCuuCUUCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 66569 0.68 0.908079
Target:  5'- cCGUGGACccggcgcucgcgcgcGCGGccGAGGCGCUCgACu -3'
miRNA:   3'- cGCACCUG---------------UGCUu-CUUCGCGAGgUGc -5'
29381 3' -53.9 NC_006151.1 + 65496 0.69 0.856123
Target:  5'- cCGcGGACGcCGgcGGAGCGCgccuccUCCGCGg -3'
miRNA:   3'- cGCaCCUGU-GCuuCUUCGCG------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 65170 0.71 0.749412
Target:  5'- uGCG-GcGCGCGAggcGGAAGCGCgggUCCGCGa -3'
miRNA:   3'- -CGCaCcUGUGCU---UCUUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64881 0.68 0.917633
Target:  5'- gGCGggagcagGGcCGCGAAGAgcacgcagcGGCGCgcgagcaccUCCACGg -3'
miRNA:   3'- -CGCa------CCuGUGCUUCU---------UCGCG---------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64771 0.69 0.885753
Target:  5'- cGCGgGGGCugGuugccGggGCGCgagcuggCCACGc -3'
miRNA:   3'- -CGCaCCUGugCuu---CuuCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64541 0.67 0.943476
Target:  5'- cGCGUcGGGgGCGgcGAGGCcguggcgcgccaGCUCgACGa -3'
miRNA:   3'- -CGCA-CCUgUGCuuCUUCG------------CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 64232 0.67 0.933868
Target:  5'- gGCGUacaGGGcCGCGAcGGcGGCGCgggCCACGc -3'
miRNA:   3'- -CGCA---CCU-GUGCU-UCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 63882 0.71 0.778126
Target:  5'- aGCGUGucCGCGucGggGCGCUCgaGCa -3'
miRNA:   3'- -CGCACcuGUGCuuCuuCGCGAGg-UGc -5'
29381 3' -53.9 NC_006151.1 + 63522 0.66 0.947919
Target:  5'- cGCG-GGGCGguCGggGAAGaCGCcggcgaCCACGu -3'
miRNA:   3'- -CGCaCCUGU--GCuuCUUC-GCGa-----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 62505 0.67 0.935867
Target:  5'- gGCGcGGACgACGGcccggcgguaccugcAGAAGCGcCUgCACGg -3'
miRNA:   3'- -CGCaCCUG-UGCU---------------UCUUCGC-GAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 60474 0.77 0.448867
Target:  5'- gGCGUGaagcGCGCGcAGAAGCGCgCCACGa -3'
miRNA:   3'- -CGCACc---UGUGCuUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 58797 0.66 0.956095
Target:  5'- aCGUGGAC-----GAAGCGCgCCGCGu -3'
miRNA:   3'- cGCACCUGugcuuCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 58448 0.69 0.848184
Target:  5'- gGCGUGcGcgcGCGCGgcGucGCGgUCCACGa -3'
miRNA:   3'- -CGCAC-C---UGUGCuuCuuCGCgAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.