Results 101 - 120 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29381 | 3' | -53.9 | NC_006151.1 | + | 46085 | 0.67 | 0.938793 |
Target: 5'- gGgGUGaaGACuauacCGAGGAGGUGCgCCACGa -3' miRNA: 3'- -CgCAC--CUGu----GCUUCUUCGCGaGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 95558 | 0.67 | 0.935867 |
Target: 5'- --aUGGGCAgGGAcucgacgccgaggccGAGGCGCUCCAgGc -3' miRNA: 3'- cgcACCUGUgCUU---------------CUUCGCGAGGUgC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 62505 | 0.67 | 0.935867 |
Target: 5'- gGCGcGGACgACGGcccggcgguaccugcAGAAGCGcCUgCACGg -3' miRNA: 3'- -CGCaCCUG-UGCU---------------UCUUCGC-GAgGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 115168 | 0.67 | 0.933868 |
Target: 5'- gGCGaagccGCGCGGcaGGggGCGCUCCAg- -3' miRNA: 3'- -CGCacc--UGUGCU--UCuuCGCGAGGUgc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 96222 | 0.67 | 0.933868 |
Target: 5'- gGCGgcGGcCGCGgcGAGGCGCacaaagaacuggUCCAUGg -3' miRNA: 3'- -CGCa-CCuGUGCuuCUUCGCG------------AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 117495 | 0.67 | 0.943476 |
Target: 5'- aCGUGGAaGCGcucGAAGCGCggacUCACGg -3' miRNA: 3'- cGCACCUgUGCuu-CUUCGCGa---GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 130384 | 0.67 | 0.943476 |
Target: 5'- gGCGUccaGCGCGAAGGccAGCGCcucgcCCGCGa -3' miRNA: 3'- -CGCAcc-UGUGCUUCU--UCGCGa----GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 88126 | 0.66 | 0.952124 |
Target: 5'- aGCGggcGGGCGCuccgcacguuGAGcaggccGggGUGCUCCGCGc -3' miRNA: 3'- -CGCa--CCUGUG----------CUU------CuuCGCGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 3931 | 0.66 | 0.952124 |
Target: 5'- aGCGgGGGCAgGccGGgcGCggGCUCCGCGg -3' miRNA: 3'- -CGCaCCUGUgCu-UCuuCG--CGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 94572 | 0.66 | 0.951714 |
Target: 5'- --aUGGACugGcugugguccacaaAGGggGCGCggUCCGCGc -3' miRNA: 3'- cgcACCUGugC-------------UUCuuCGCG--AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 133985 | 0.66 | 0.947919 |
Target: 5'- -gGUGGAgACGAuggaAGAgAGCGCgggggCCACc -3' miRNA: 3'- cgCACCUgUGCU----UCU-UCGCGa----GGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 99441 | 0.66 | 0.947919 |
Target: 5'- uCGcGGACACGcuGGAGCccCUCUACGg -3' miRNA: 3'- cGCaCCUGUGCuuCUUCGc-GAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 85297 | 0.66 | 0.947919 |
Target: 5'- cGCGUGc-CGCGc--GAGCaGCUCCACGg -3' miRNA: 3'- -CGCACcuGUGCuucUUCG-CGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 63522 | 0.66 | 0.947919 |
Target: 5'- cGCG-GGGCGguCGggGAAGaCGCcggcgaCCACGu -3' miRNA: 3'- -CGCaCCUGU--GCuuCUUC-GCGa-----GGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 56237 | 0.66 | 0.947919 |
Target: 5'- cCGaGGACccgACGGAGuucGCGCUCUGCGu -3' miRNA: 3'- cGCaCCUG---UGCUUCuu-CGCGAGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 117423 | 0.66 | 0.947919 |
Target: 5'- aGCGUGacCACcgugccguuGggGAAGCGCgggUCCGCGc -3' miRNA: 3'- -CGCACcuGUG---------CuuCUUCGCG---AGGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 85153 | 0.66 | 0.947919 |
Target: 5'- cGCGUGcGGCAgGggGccggcgccgcGGGCGCcgCCGCc -3' miRNA: 3'- -CGCAC-CUGUgCuuC----------UUCGCGa-GGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 70168 | 0.66 | 0.947919 |
Target: 5'- aGCGcGGGCGCGAAGc-GCGUcaUCUGCu -3' miRNA: 3'- -CGCaCCUGUGCUUCuuCGCG--AGGUGc -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 82226 | 0.66 | 0.947919 |
Target: 5'- ---aGcGGCAgGAAGGAGCGCagCGCGa -3' miRNA: 3'- cgcaC-CUGUgCUUCUUCGCGagGUGC- -5' |
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29381 | 3' | -53.9 | NC_006151.1 | + | 17373 | 0.67 | 0.945282 |
Target: 5'- cCGUGGggucggaccguguccGCACGAcGggGCGCguggCgCGCGg -3' miRNA: 3'- cGCACC---------------UGUGCUuCuuCGCGa---G-GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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